Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 AC119751.2-201ENST00000504529 210 ntBASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 RN7SL828P-201ENST00000607615 303 ntBASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 AC007431.3-201ENST00000623221 587 ntBASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 AC131009.4-201ENST00000624048 1740 ntBASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
ZNF541Q9H0D2 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 AC004408.2-201ENST00000623613 2777 ntBASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 SPDYE19P-201ENST00000338590 713 ntBASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 MPDU1-223ENST00000582151 728 ntBASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 AC120498.9-201ENST00000339021 3867 ntBASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
ZNF541Q9H0D2 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 AP001350.2-201ENST00000625104 1094 ntBASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
ZNF541Q9H0D2 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 AL391825.1-201ENST00000457671 1364 ntBASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 AC087499.6-201ENST00000411576 835 ntBASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 RASL12-203ENST00000434605 982 ntTSL 2 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 RN7SL837P-201ENST00000463010 287 ntBASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 KRT18P34-201ENST00000488218 1270 ntBASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 AC011495.1-201ENST00000498085 584 ntBASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 PRYP6-201ENST00000514804 343 ntBASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 AL133215.2-201ENST00000609242 977 ntBASIC20.18■□□□□ 0.82
ZNF541Q9H0D2 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms