Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 AC016396.2-201ENST00000562575 1417 ntBASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 BOC-212ENST00000485230 2173 ntTSL 2 BASIC21.76■■□□□ 1.07
SHANK3Q9BYB0 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 AC087499.5-201ENST00000452760 1342 ntBASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 GOLGA2P9-201ENST00000596977 1937 ntBASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 MTND6P24-201ENST00000440466 518 ntBASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 GIMAP3P-201ENST00000495150 836 ntBASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 PARP8-218ENST00000513738 596 ntTSL 4 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 LITAF-210ENST00000571976 548 ntTSL 2 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 LITAF-214ENST00000574703 486 ntTSL 2 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC21.75■■□□□ 1.07
SHANK3Q9BYB0 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 SNX33P1-201ENST00000592116 1762 ntBASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 RNA5SP410-201ENST00000516285 106 ntBASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 AP001350.2-201ENST00000625104 1094 ntBASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK3Q9BYB0 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 AC124947.2-201ENST00000547118 1133 ntBASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 TP53TG3HP-202ENST00000569755 579 ntBASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 AC135050.7-201ENST00000624508 2218 ntBASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC21.73■■□□□ 1.07
SHANK3Q9BYB0 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms