Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CDX2Q99626 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.58■□□□□ 0.4
CDX2Q99626 SDHAP3-202ENST00000515467 728 ntBASIC17.58■□□□□ 0.4
CDX2Q99626 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX2Q99626 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.58■□□□□ 0.4
CDX2Q99626 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX2Q99626 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.58■□□□□ 0.4
CDX2Q99626 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX2Q99626 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC17.58■□□□□ 0.4
CDX2Q99626 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.58■□□□□ 0.4
CDX2Q99626 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.58■□□□□ 0.4
CDX2Q99626 RPSAP52-203ENST00000622976 1023 ntBASIC17.58■□□□□ 0.4
CDX2Q99626 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.58■□□□□ 0.4
CDX2Q99626 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDX2Q99626 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
CDX2Q99626 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
CDX2Q99626 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CDX2Q99626 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CDX2Q99626 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.58■□□□□ 0.4
CDX2Q99626 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.57■□□□□ 0.4
CDX2Q99626 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CDX2Q99626 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CDX2Q99626 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CDX2Q99626 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
CDX2Q99626 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC17.57■□□□□ 0.4
CDX2Q99626 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.57■□□□□ 0.4
CDX2Q99626 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 SERBP1P3-201ENST00000459980 809 ntBASIC17.57■□□□□ 0.4
CDX2Q99626 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC17.57■□□□□ 0.4
CDX2Q99626 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.57■□□□□ 0.4
CDX2Q99626 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CDX2Q99626 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDX2Q99626 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.57■□□□□ 0.4
CDX2Q99626 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.57■□□□□ 0.4
CDX2Q99626 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.57■□□□□ 0.4
CDX2Q99626 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.56■□□□□ 0.4
CDX2Q99626 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CDX2Q99626 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CDX2Q99626 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.56■□□□□ 0.4
CDX2Q99626 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.56■□□□□ 0.4
CDX2Q99626 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CDX2Q99626 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.56■□□□□ 0.4
CDX2Q99626 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.56■□□□□ 0.4
CDX2Q99626 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.56■□□□□ 0.4
CDX2Q99626 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.56■□□□□ 0.4
CDX2Q99626 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17.56■□□□□ 0.4
CDX2Q99626 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.56■□□□□ 0.4
CDX2Q99626 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
CDX2Q99626 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.56■□□□□ 0.4
CDX2Q99626 DERL2-202ENST00000570848 657 ntTSL 5 BASIC17.56■□□□□ 0.4
CDX2Q99626 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.56■□□□□ 0.4
CDX2Q99626 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.56■□□□□ 0.4
CDX2Q99626 U62317.3-201ENST00000608319 855 ntBASIC17.56■□□□□ 0.4
CDX2Q99626 AL139327.4-201ENST00000612362 153 ntBASIC17.56■□□□□ 0.4
CDX2Q99626 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.56■□□□□ 0.4
CDX2Q99626 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.56■□□□□ 0.4
CDX2Q99626 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.56■□□□□ 0.4
CDX2Q99626 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CDX2Q99626 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CDX2Q99626 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
CDX2Q99626 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CDX2Q99626 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.55■□□□□ 0.4
CDX2Q99626 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.55■□□□□ 0.4
CDX2Q99626 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
CDX2Q99626 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDX2Q99626 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDX2Q99626 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDX2Q99626 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.55■□□□□ 0.4
CDX2Q99626 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.55■□□□□ 0.4
CDX2Q99626 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CDX2Q99626 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms