Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 AC106730.1-201ENST00000566722 1090 ntBASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 AC073592.4-201ENST00000623827 446 ntBASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 AC099398.1-201ENST00000567919 2776 ntBASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CHMP4CQ96CF2 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 ELK2BP-201ENST00000415014 1224 ntBASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 UNC93B6-202ENST00000528242 690 ntBASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 AC124947.2-201ENST00000547118 1133 ntBASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 AL356488.2-201ENST00000602755 427 ntBASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 AD000864.1-201ENST00000624076 2295 ntBASIC20.36■□□□□ 0.85
CHMP4CQ96CF2 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 AC009336.1-201ENST00000608941 1553 ntBASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 SIGLEC30P-201ENST00000455569 941 ntBASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 SIGLEC16-201ENST00000599858 1437 ntBASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CHMP4CQ96CF2 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP4CQ96CF2 LAGE3P1-201ENST00000425356 484 ntBASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms