Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.35■□□□□ 0.05
CPNE4Q96A23 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.35■□□□□ 0.05
CPNE4Q96A23 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
CPNE4Q96A23 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.35■□□□□ 0.05
CPNE4Q96A23 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.35■□□□□ 0.05
CPNE4Q96A23 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.35■□□□□ 0.05
CPNE4Q96A23 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.35■□□□□ 0.05
CPNE4Q96A23 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 AC104109.2-201ENST00000602919 1418 ntBASIC15.34■□□□□ 0.05
CPNE4Q96A23 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.34■□□□□ 0.05
CPNE4Q96A23 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 AC106730.1-201ENST00000566722 1090 ntBASIC15.34■□□□□ 0.05
CPNE4Q96A23 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.34■□□□□ 0.05
CPNE4Q96A23 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CPNE4Q96A23 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CPNE4Q96A23 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
CPNE4Q96A23 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.05
CPNE4Q96A23 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CPNE4Q96A23 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.33■□□□□ 0.05
CPNE4Q96A23 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CPNE4Q96A23 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
CPNE4Q96A23 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC15.33■□□□□ 0.04
CPNE4Q96A23 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.33■□□□□ 0.04
CPNE4Q96A23 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 MRPL20P1-201ENST00000400819 433 ntBASIC15.33■□□□□ 0.04
CPNE4Q96A23 AC009947.1-201ENST00000444350 727 ntBASIC15.33■□□□□ 0.04
CPNE4Q96A23 AC108073.2-201ENST00000464002 357 ntBASIC15.33■□□□□ 0.04
CPNE4Q96A23 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.33■□□□□ 0.04
CPNE4Q96A23 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CPNE4Q96A23 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.33■□□□□ 0.04
CPNE4Q96A23 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.33■□□□□ 0.04
CPNE4Q96A23 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.33■□□□□ 0.04
CPNE4Q96A23 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.33■□□□□ 0.04
CPNE4Q96A23 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CPNE4Q96A23 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CPNE4Q96A23 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.33■□□□□ 0.04
CPNE4Q96A23 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.33■□□□□ 0.04
CPNE4Q96A23 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CPNE4Q96A23 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CPNE4Q96A23 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CPNE4Q96A23 PP12613-201ENST00000424958 2230 ntBASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms