Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC092053.1-201ENST00000605787 1936 ntBASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SH3RF1Q7Z6J0 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
SH3RF1Q7Z6J0 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SH3RF1Q7Z6J0 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.52■□□□□ 0.71
SH3RF1Q7Z6J0 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
SH3RF1Q7Z6J0 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SH3RF1Q7Z6J0 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
SH3RF1Q7Z6J0 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SH3RF1Q7Z6J0 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SH3RF1Q7Z6J0 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SH3RF1Q7Z6J0 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SH3RF1Q7Z6J0 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 AGGF1P2-201ENST00000426656 2106 ntBASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 AC106886.4-201ENST00000623557 2502 ntBASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SH3RF1Q7Z6J0 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 PRSS29P-201ENST00000440800 595 ntBASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 RPS15P9-201ENST00000494093 319 ntBASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 AC008667.4-201ENST00000607370 168 ntBASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 AC004877.2-201ENST00000623941 599 ntBASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SH3RF1Q7Z6J0 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.49■□□□□ 0.71
SH3RF1Q7Z6J0 PAWRP1-201ENST00000451083 565 ntBASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms