Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 AC105339.1-204ENST00000636249 355 ntBASIC21.2■□□□□ 0.98
UBE3BQ7Z3V4 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3BQ7Z3V4 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC21.2■□□□□ 0.98
UBE3BQ7Z3V4 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3BQ7Z3V4 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3BQ7Z3V4 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3BQ7Z3V4 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3BQ7Z3V4 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
UBE3BQ7Z3V4 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3BQ7Z3V4 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3BQ7Z3V4 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
UBE3BQ7Z3V4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 HCG11-201ENST00000411553 5696 ntBASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 AC004461.1-201ENST00000412461 403 ntBASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 AP000344.2-201ENST00000512987 629 ntBASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBE3BQ7Z3V4 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 AL355306.1-201ENST00000415580 579 ntBASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBE3BQ7Z3V4 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 AC139713.2-201ENST00000641328 2723 ntBASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 AC091167.2-201ENST00000579581 588 ntBASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 AC022145.2-201ENST00000598203 171 ntBASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 AL121761.2-201ENST00000598007 1648 ntBASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBE3BQ7Z3V4 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
UBE3BQ7Z3V4 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
UBE3BQ7Z3V4 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
UBE3BQ7Z3V4 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
UBE3BQ7Z3V4 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC21.16■□□□□ 0.98
UBE3BQ7Z3V4 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC21.16■□□□□ 0.98
UBE3BQ7Z3V4 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
UBE3BQ7Z3V4 KRT8P49-201ENST00000604166 1432 ntBASIC21.16■□□□□ 0.98
UBE3BQ7Z3V4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms