Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 CLEC4GP1-201ENST00000596555 870 ntBASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 REXO1L6P-202ENST00000619970 1078 ntBASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 AL139288.1-201ENST00000623748 933 ntBASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF549Q6P9A3 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
ZNF549Q6P9A3 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
ZNF549Q6P9A3 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
ZNF549Q6P9A3 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
ZNF549Q6P9A3 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 AP002414.1-201ENST00000391405 1147 ntBASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 AC008608.2-201ENST00000606089 416 ntBASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 PCDHA14-201ENST00000506751 2298 ntBASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF549Q6P9A3 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 AC092171.3-201ENST00000610122 2651 ntBASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 AF238378.1-201ENST00000526806 358 ntBASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 CROCCP1-201ENST00000426910 5675 ntBASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.94■□□□□ 0.3
ZNF549Q6P9A3 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms