Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 AC079140.1-201ENST00000508039 487 ntBASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 DUX4L17-201ENST00000557360 1267 ntBASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 SPDYE9P-201ENST00000570642 692 ntBASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 SPDYE10P-202ENST00000612005 668 ntBASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 SPDYE8P-202ENST00000612377 668 ntBASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 AC016396.2-201ENST00000562575 1417 ntBASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC15.31■□□□□ 0.04
RNFT1Q5M7Z0 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 FAM86C2P-203ENST00000528684 1004 ntBASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 LINC00628-201ENST00000628516 1289 ntBASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 AC116353.5-201ENST00000638148 1699 ntBASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
RNFT1Q5M7Z0 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AL138688.1-201ENST00000624851 1594 ntBASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AL353732.1-201ENST00000569618 1459 ntBASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AC005237.2-201ENST00000434368 219 ntBASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AL592309.1-201ENST00000443127 649 ntBASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AL135744.1-201ENST00000565098 629 ntBASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms