Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.37■□□□□ 0.37
USP39Q53GS9 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.37■□□□□ 0.37
USP39Q53GS9 REXO1L3P-201ENST00000622202 1288 ntBASIC17.37■□□□□ 0.37
USP39Q53GS9 AC105339.1-204ENST00000636249 355 ntBASIC17.37■□□□□ 0.37
USP39Q53GS9 AC092902.6-201ENST00000641783 218 ntBASIC17.37■□□□□ 0.37
USP39Q53GS9 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
USP39Q53GS9 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
USP39Q53GS9 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP39Q53GS9 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP39Q53GS9 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP39Q53GS9 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.36■□□□□ 0.37
USP39Q53GS9 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.36■□□□□ 0.37
USP39Q53GS9 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.36■□□□□ 0.37
USP39Q53GS9 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.36■□□□□ 0.37
USP39Q53GS9 AL096865.1-201ENST00000606796 927 ntBASIC17.36■□□□□ 0.37
USP39Q53GS9 AC093512.1-201ENST00000617969 520 ntBASIC17.36■□□□□ 0.37
USP39Q53GS9 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.36■□□□□ 0.37
USP39Q53GS9 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
USP39Q53GS9 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.36■□□□□ 0.37
USP39Q53GS9 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP39Q53GS9 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.36■□□□□ 0.37
USP39Q53GS9 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.35■□□□□ 0.37
USP39Q53GS9 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.35■□□□□ 0.37
USP39Q53GS9 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.35■□□□□ 0.37
USP39Q53GS9 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
USP39Q53GS9 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
USP39Q53GS9 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.35■□□□□ 0.37
USP39Q53GS9 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.35■□□□□ 0.37
USP39Q53GS9 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 AC004461.1-201ENST00000412461 403 ntBASIC17.35■□□□□ 0.37
USP39Q53GS9 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.35■□□□□ 0.37
USP39Q53GS9 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.35■□□□□ 0.37
USP39Q53GS9 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.35■□□□□ 0.37
USP39Q53GS9 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.35■□□□□ 0.37
USP39Q53GS9 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.35■□□□□ 0.37
USP39Q53GS9 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.35■□□□□ 0.37
USP39Q53GS9 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
USP39Q53GS9 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
USP39Q53GS9 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
USP39Q53GS9 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.35■□□□□ 0.37
USP39Q53GS9 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.35■□□□□ 0.37
USP39Q53GS9 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.35■□□□□ 0.37
USP39Q53GS9 AC009949.1-201ENST00000623048 1830 ntBASIC17.35■□□□□ 0.37
USP39Q53GS9 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.35■□□□□ 0.37
USP39Q53GS9 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP39Q53GS9 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
USP39Q53GS9 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
USP39Q53GS9 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.34■□□□□ 0.37
USP39Q53GS9 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.34■□□□□ 0.37
USP39Q53GS9 AL035633.1-201ENST00000406139 838 ntBASIC17.34■□□□□ 0.37
USP39Q53GS9 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.34■□□□□ 0.37
USP39Q53GS9 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.34■□□□□ 0.37
USP39Q53GS9 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.34■□□□□ 0.37
USP39Q53GS9 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.34■□□□□ 0.37
USP39Q53GS9 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
USP39Q53GS9 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 HLA-J-203ENST00000494367 1087 ntBASIC17.34■□□□□ 0.37
USP39Q53GS9 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.34■□□□□ 0.37
USP39Q53GS9 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
USP39Q53GS9 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP39Q53GS9 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms