Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP41Q3LFD5 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP41Q3LFD5 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP41Q3LFD5 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 LINC00628-201ENST00000628516 1289 ntBASIC18.1■□□□□ 0.49
USP41Q3LFD5 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP41Q3LFD5 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
USP41Q3LFD5 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP41Q3LFD5 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
USP41Q3LFD5 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP41Q3LFD5 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP41Q3LFD5 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
USP41Q3LFD5 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP41Q3LFD5 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP41Q3LFD5 HMGA1P7-201ENST00000406908 502 ntBASIC18.09■□□□□ 0.49
USP41Q3LFD5 AL627223.1-201ENST00000416693 442 ntBASIC18.09■□□□□ 0.49
USP41Q3LFD5 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP41Q3LFD5 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.09■□□□□ 0.49
USP41Q3LFD5 RN7SL589P-201ENST00000481268 310 ntBASIC18.09■□□□□ 0.49
USP41Q3LFD5 KRT8P48-201ENST00000515599 1220 ntBASIC18.09■□□□□ 0.49
USP41Q3LFD5 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.09■□□□□ 0.49
USP41Q3LFD5 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
USP41Q3LFD5 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
USP41Q3LFD5 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.09■□□□□ 0.49
USP41Q3LFD5 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.09■□□□□ 0.49
USP41Q3LFD5 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.09■□□□□ 0.49
USP41Q3LFD5 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP41Q3LFD5 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.09■□□□□ 0.49
USP41Q3LFD5 AL161645.1-201ENST00000622716 1255 ntBASIC18.09■□□□□ 0.49
USP41Q3LFD5 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP41Q3LFD5 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP41Q3LFD5 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP41Q3LFD5 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP41Q3LFD5 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.09■□□□□ 0.49
USP41Q3LFD5 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP41Q3LFD5 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP41Q3LFD5 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
USP41Q3LFD5 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP41Q3LFD5 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
USP41Q3LFD5 AC012569.1-201ENST00000591191 1524 ntBASIC18.08■□□□□ 0.49
USP41Q3LFD5 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP41Q3LFD5 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
USP41Q3LFD5 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP41Q3LFD5 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
USP41Q3LFD5 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP41Q3LFD5 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
USP41Q3LFD5 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
USP41Q3LFD5 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
USP41Q3LFD5 TFAMP1-201ENST00000412727 736 ntBASIC18.08■□□□□ 0.48
USP41Q3LFD5 AC005237.2-201ENST00000434368 219 ntBASIC18.08■□□□□ 0.48
USP41Q3LFD5 AC109322.1-201ENST00000524499 1264 ntBASIC18.08■□□□□ 0.48
USP41Q3LFD5 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.08■□□□□ 0.48
USP41Q3LFD5 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.08■□□□□ 0.48
USP41Q3LFD5 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.08■□□□□ 0.48
USP41Q3LFD5 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.08■□□□□ 0.48
USP41Q3LFD5 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP41Q3LFD5 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP41Q3LFD5 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.08■□□□□ 0.48
USP41Q3LFD5 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP41Q3LFD5 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.08■□□□□ 0.48
USP41Q3LFD5 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP41Q3LFD5 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP41Q3LFD5 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.08■□□□□ 0.48
USP41Q3LFD5 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.08■□□□□ 0.48
USP41Q3LFD5 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.07■□□□□ 0.48
USP41Q3LFD5 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
USP41Q3LFD5 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 AKAP8P1-201ENST00000434743 1349 ntBASIC18.07■□□□□ 0.48
USP41Q3LFD5 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
USP41Q3LFD5 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
USP41Q3LFD5 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
USP41Q3LFD5 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.07■□□□□ 0.48
USP41Q3LFD5 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.07■□□□□ 0.48
USP41Q3LFD5 AC093520.2-201ENST00000561830 333 ntBASIC18.07■□□□□ 0.48
USP41Q3LFD5 RARRES2P8-201ENST00000566335 367 ntBASIC18.07■□□□□ 0.48
USP41Q3LFD5 MIR3197-201ENST00000582241 73 ntBASIC18.07■□□□□ 0.48
USP41Q3LFD5 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.07■□□□□ 0.48
USP41Q3LFD5 AC009093.7-201ENST00000623853 1223 ntBASIC18.07■□□□□ 0.48
USP41Q3LFD5 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms