Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HMGCS1Q01581 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGCS1Q01581 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGCS1Q01581 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
HMGCS1Q01581 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
HMGCS1Q01581 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
HMGCS1Q01581 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGCS1Q01581 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 AC097637.2-201ENST00000624096 1997 ntBASIC16.48■□□□□ 0.23
HMGCS1Q01581 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGCS1Q01581 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.48■□□□□ 0.23
HMGCS1Q01581 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.48■□□□□ 0.23
HMGCS1Q01581 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.48■□□□□ 0.23
HMGCS1Q01581 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.48■□□□□ 0.23
HMGCS1Q01581 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.48■□□□□ 0.23
HMGCS1Q01581 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.48■□□□□ 0.23
HMGCS1Q01581 AC138894.3-201ENST00000603787 634 ntBASIC16.48■□□□□ 0.23
HMGCS1Q01581 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGCS1Q01581 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGCS1Q01581 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HMGCS1Q01581 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGCS1Q01581 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGCS1Q01581 AC018695.7-201ENST00000624587 2492 ntBASIC16.47■□□□□ 0.23
HMGCS1Q01581 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGCS1Q01581 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGCS1Q01581 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGCS1Q01581 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGCS1Q01581 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGCS1Q01581 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGCS1Q01581 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 ABCD1P5-201ENST00000445663 754 ntBASIC16.47■□□□□ 0.23
HMGCS1Q01581 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGCS1Q01581 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGCS1Q01581 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGCS1Q01581 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGCS1Q01581 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGCS1Q01581 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGCS1Q01581 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGCS1Q01581 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGCS1Q01581 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 AL591684.3-201ENST00000605187 298 ntBASIC16.46■□□□□ 0.23
HMGCS1Q01581 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGCS1Q01581 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGCS1Q01581 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
HMGCS1Q01581 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
HMGCS1Q01581 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.22
HMGCS1Q01581 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
HMGCS1Q01581 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms