Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCNA1P78396 AC012645.4-201ENST00000610691 1061 ntBASIC19.31■□□□□ 0.68
CCNA1P78396 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCNA1P78396 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCNA1P78396 HFE2-206ENST00000634927 506 ntTSL 4 BASIC19.31■□□□□ 0.68
CCNA1P78396 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCNA1P78396 BICD1-207ENST00000551848 1962 ntBASIC19.31■□□□□ 0.68
CCNA1P78396 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCNA1P78396 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CCNA1P78396 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
CCNA1P78396 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
CCNA1P78396 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCNA1P78396 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC19.31■□□□□ 0.68
CCNA1P78396 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.31■□□□□ 0.68
CCNA1P78396 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.31■□□□□ 0.68
CCNA1P78396 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCNA1P78396 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCNA1P78396 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCNA1P78396 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
CCNA1P78396 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CCNA1P78396 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCNA1P78396 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.3■□□□□ 0.68
CCNA1P78396 SLC22A20-204ENST00000530038 1673 ntBASIC19.3■□□□□ 0.68
CCNA1P78396 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCNA1P78396 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.3■□□□□ 0.68
CCNA1P78396 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.3■□□□□ 0.68
CCNA1P78396 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.3■□□□□ 0.68
CCNA1P78396 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCNA1P78396 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCNA1P78396 RAC2-204ENST00000406508 893 ntTSL 5 BASIC19.3■□□□□ 0.68
CCNA1P78396 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CCNA1P78396 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC19.3■□□□□ 0.68
CCNA1P78396 AC005225.4-201ENST00000557330 545 ntBASIC19.3■□□□□ 0.68
CCNA1P78396 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC19.3■□□□□ 0.68
CCNA1P78396 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCNA1P78396 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC19.3■□□□□ 0.68
CCNA1P78396 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.3■□□□□ 0.68
CCNA1P78396 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CCNA1P78396 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.3■□□□□ 0.68
CCNA1P78396 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCNA1P78396 AL355312.1-201ENST00000407115 2176 ntBASIC19.3■□□□□ 0.68
CCNA1P78396 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CCNA1P78396 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCNA1P78396 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CCNA1P78396 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCNA1P78396 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCNA1P78396 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.3■□□□□ 0.68
CCNA1P78396 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.29■□□□□ 0.68
CCNA1P78396 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.29■□□□□ 0.68
CCNA1P78396 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CCNA1P78396 AC012317.2-201ENST00000623305 2251 ntBASIC19.29■□□□□ 0.68
CCNA1P78396 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 MIR661-201ENST00000384842 89 ntBASIC19.29■□□□□ 0.68
CCNA1P78396 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC19.29■□□□□ 0.68
CCNA1P78396 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC19.29■□□□□ 0.68
CCNA1P78396 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 COX11-202ENST00000571584 1108 ntTSL 2 BASIC19.29■□□□□ 0.68
CCNA1P78396 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.29■□□□□ 0.68
CCNA1P78396 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.29■□□□□ 0.68
CCNA1P78396 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.29■□□□□ 0.68
CCNA1P78396 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CCNA1P78396 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CCNA1P78396 AC090340.1-201ENST00000620778 4980 ntBASIC19.29■□□□□ 0.68
CCNA1P78396 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCNA1P78396 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCNA1P78396 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCNA1P78396 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCNA1P78396 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCNA1P78396 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CCNA1P78396 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCNA1P78396 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CCNA1P78396 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCNA1P78396 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCNA1P78396 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC19.28■□□□□ 0.68
CCNA1P78396 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC19.28■□□□□ 0.68
CCNA1P78396 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC19.28■□□□□ 0.68
CCNA1P78396 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC19.28■□□□□ 0.68
CCNA1P78396 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC19.28■□□□□ 0.68
CCNA1P78396 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CCNA1P78396 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC19.28■□□□□ 0.68
CCNA1P78396 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CCNA1P78396 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.28■□□□□ 0.68
CCNA1P78396 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC19.28■□□□□ 0.68
CCNA1P78396 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CCNA1P78396 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms