Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
ABCA4P78363 AL513480.1-201ENST00000451731 511 ntBASIC14.66□□□□□ -0.06
ABCA4P78363 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
ABCA4P78363 SLC25A6P2-201ENST00000497974 877 ntBASIC14.66□□□□□ -0.06
ABCA4P78363 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC14.66□□□□□ -0.06
ABCA4P78363 AL512356.2-201ENST00000546955 174 ntBASIC14.66□□□□□ -0.06
ABCA4P78363 AC027307.3-201ENST00000594262 1100 ntBASIC14.66□□□□□ -0.06
ABCA4P78363 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 FLJ13224-201ENST00000313737 1514 ntBASIC14.66□□□□□ -0.06
ABCA4P78363 CD276-203ENST00000537340 2439 ntTSL 2 BASIC14.66□□□□□ -0.06
ABCA4P78363 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC14.66□□□□□ -0.06
ABCA4P78363 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.66□□□□□ -0.06
ABCA4P78363 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.66□□□□□ -0.06
ABCA4P78363 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.66□□□□□ -0.06
ABCA4P78363 MNT-208ENST00000575394 606 ntTSL 4 BASIC14.66□□□□□ -0.06
ABCA4P78363 AL009183.1-201ENST00000603760 355 ntBASIC14.66□□□□□ -0.06
ABCA4P78363 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
ABCA4P78363 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC14.65□□□□□ -0.06
ABCA4P78363 NME9-203ENST00000383180 2133 ntTSL 2 BASIC14.65□□□□□ -0.06
ABCA4P78363 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC14.65□□□□□ -0.06
ABCA4P78363 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
ABCA4P78363 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
ABCA4P78363 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
ABCA4P78363 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC14.65□□□□□ -0.06
ABCA4P78363 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC14.65□□□□□ -0.06
ABCA4P78363 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC14.65□□□□□ -0.06
ABCA4P78363 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC14.65□□□□□ -0.06
ABCA4P78363 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC14.65□□□□□ -0.06
ABCA4P78363 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
ABCA4P78363 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.65□□□□□ -0.06
ABCA4P78363 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.65□□□□□ -0.06
ABCA4P78363 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
ABCA4P78363 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.65□□□□□ -0.06
ABCA4P78363 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 BSG-214ENST00000614867 960 ntTSL 3 BASIC14.65□□□□□ -0.06
ABCA4P78363 AC008761.3-201ENST00000624803 892 ntBASIC14.65□□□□□ -0.06
ABCA4P78363 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC14.65□□□□□ -0.06
ABCA4P78363 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC14.65□□□□□ -0.06
ABCA4P78363 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
ABCA4P78363 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC14.65□□□□□ -0.06
ABCA4P78363 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
ABCA4P78363 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
ABCA4P78363 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC14.64□□□□□ -0.07
ABCA4P78363 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCA4P78363 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCA4P78363 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCA4P78363 FAM86C2P-203ENST00000528684 1004 ntBASIC14.64□□□□□ -0.07
ABCA4P78363 CD7-202ENST00000578509 925 ntTSL 3 BASIC14.64□□□□□ -0.07
ABCA4P78363 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 AL359881.2-201ENST00000602973 570 ntBASIC14.64□□□□□ -0.07
ABCA4P78363 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.64□□□□□ -0.07
ABCA4P78363 AL358472.5-202ENST00000641448 1267 ntBASIC14.64□□□□□ -0.07
ABCA4P78363 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 LYSMD4-203ENST00000378904 2122 ntBASIC14.64□□□□□ -0.07
ABCA4P78363 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCA4P78363 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
ABCA4P78363 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCA4P78363 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
ABCA4P78363 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCA4P78363 FST-202ENST00000396947 2538 ntTSL 5 BASIC14.64□□□□□ -0.07
ABCA4P78363 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
ABCA4P78363 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms