Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 SPEG-225ENST00000617028 815 ntTSL 5 BASIC19.2■□□□□ 0.66
TPM4P67936 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.2■□□□□ 0.66
TPM4P67936 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.2■□□□□ 0.66
TPM4P67936 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.2■□□□□ 0.66
TPM4P67936 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 AC092171.3-201ENST00000610122 2651 ntBASIC19.2■□□□□ 0.66
TPM4P67936 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.2■□□□□ 0.66
TPM4P67936 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.2■□□□□ 0.66
TPM4P67936 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TPM4P67936 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TPM4P67936 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.2■□□□□ 0.66
TPM4P67936 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM4P67936 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM4P67936 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM4P67936 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM4P67936 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM4P67936 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM4P67936 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
TPM4P67936 AL513523.2-202ENST00000427283 2040 ntBASIC19.19■□□□□ 0.66
TPM4P67936 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.19■□□□□ 0.66
TPM4P67936 MIR600HG-201ENST00000449175 5984 ntBASIC19.19■□□□□ 0.66
TPM4P67936 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM4P67936 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM4P67936 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.19■□□□□ 0.66
TPM4P67936 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TPM4P67936 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.19■□□□□ 0.66
TPM4P67936 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.19■□□□□ 0.66
TPM4P67936 MIR4497-201ENST00000583208 89 ntBASIC19.19■□□□□ 0.66
TPM4P67936 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TPM4P67936 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TPM4P67936 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.19■□□□□ 0.66
TPM4P67936 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.19■□□□□ 0.66
TPM4P67936 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM4P67936 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TPM4P67936 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
TPM4P67936 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TPM4P67936 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
TPM4P67936 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
TPM4P67936 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 STARP1-201ENST00000397973 869 ntBASIC19.18■□□□□ 0.66
TPM4P67936 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 LIN28AP1-201ENST00000429574 405 ntBASIC19.18■□□□□ 0.66
TPM4P67936 TSPY15P-201ENST00000457163 923 ntBASIC19.18■□□□□ 0.66
TPM4P67936 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.18■□□□□ 0.66
TPM4P67936 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.18■□□□□ 0.66
TPM4P67936 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TPM4P67936 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
TPM4P67936 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.18■□□□□ 0.66
TPM4P67936 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TPM4P67936 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TPM4P67936 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TPM4P67936 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM4P67936 ANKRD26P3-201ENST00000454044 2748 ntBASIC19.17■□□□□ 0.66
TPM4P67936 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
TPM4P67936 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.17■□□□□ 0.66
TPM4P67936 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM4P67936 AC008741.2-201ENST00000612792 3115 ntBASIC19.17■□□□□ 0.66
TPM4P67936 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TPM4P67936 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.17■□□□□ 0.66
TPM4P67936 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TPM4P67936 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
TPM4P67936 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM4P67936 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM4P67936 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM4P67936 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TPM4P67936 SPDYE15P-201ENST00000424157 909 ntBASIC19.17■□□□□ 0.66
TPM4P67936 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.17■□□□□ 0.66
TPM4P67936 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
TPM4P67936 COX11P1-201ENST00000489116 835 ntBASIC19.17■□□□□ 0.66
TPM4P67936 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.17■□□□□ 0.66
TPM4P67936 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TPM4P67936 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.17■□□□□ 0.66
TPM4P67936 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.17■□□□□ 0.66
TPM4P67936 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC19.17■□□□□ 0.66
TPM4P67936 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms