Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.59■□□□□ 0.73
HMGCS2P54868 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGCS2P54868 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGCS2P54868 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGCS2P54868 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HMGCS2P54868 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HMGCS2P54868 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
HMGCS2P54868 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGCS2P54868 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGCS2P54868 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.58■□□□□ 0.73
HMGCS2P54868 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGCS2P54868 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGCS2P54868 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGCS2P54868 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HMGCS2P54868 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HMGCS2P54868 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGCS2P54868 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
HMGCS2P54868 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC19.58■□□□□ 0.72
HMGCS2P54868 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC19.58■□□□□ 0.72
HMGCS2P54868 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC19.58■□□□□ 0.72
HMGCS2P54868 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC19.58■□□□□ 0.72
HMGCS2P54868 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
HMGCS2P54868 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HMGCS2P54868 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.58■□□□□ 0.72
HMGCS2P54868 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HMGCS2P54868 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.58■□□□□ 0.72
HMGCS2P54868 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.58■□□□□ 0.72
HMGCS2P54868 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
HMGCS2P54868 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
HMGCS2P54868 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.57■□□□□ 0.72
HMGCS2P54868 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGCS2P54868 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 MIR346-201ENST00000362234 95 ntBASIC19.57■□□□□ 0.72
HMGCS2P54868 SLC25A1P3-201ENST00000395415 828 ntBASIC19.57■□□□□ 0.72
HMGCS2P54868 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC19.57■□□□□ 0.72
HMGCS2P54868 AC097493.3-201ENST00000509725 367 ntBASIC19.57■□□□□ 0.72
HMGCS2P54868 AC069120.2-201ENST00000524091 540 ntBASIC19.57■□□□□ 0.72
HMGCS2P54868 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC19.57■□□□□ 0.72
HMGCS2P54868 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC19.57■□□□□ 0.72
HMGCS2P54868 AL158211.3-201ENST00000607385 239 ntBASIC19.57■□□□□ 0.72
HMGCS2P54868 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.57■□□□□ 0.72
HMGCS2P54868 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGCS2P54868 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGCS2P54868 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
HMGCS2P54868 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC19.57■□□□□ 0.72
HMGCS2P54868 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 AC093525.9-201ENST00000624961 1746 ntBASIC19.56■□□□□ 0.72
HMGCS2P54868 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGCS2P54868 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
HMGCS2P54868 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
HMGCS2P54868 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGCS2P54868 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
HMGCS2P54868 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGCS2P54868 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGCS2P54868 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
HMGCS2P54868 RBM7-207ENST00000544582 692 ntTSL 3 BASIC19.56■□□□□ 0.72
HMGCS2P54868 AL138918.1-201ENST00000568306 659 ntBASIC19.56■□□□□ 0.72
HMGCS2P54868 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
HMGCS2P54868 MIR3909-201ENST00000579518 119 ntBASIC19.56■□□□□ 0.72
HMGCS2P54868 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.56■□□□□ 0.72
HMGCS2P54868 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 LINC02560-201ENST00000596379 459 ntBASIC19.56■□□□□ 0.72
HMGCS2P54868 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.56■□□□□ 0.72
HMGCS2P54868 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.56■□□□□ 0.72
HMGCS2P54868 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 AC131009.4-201ENST00000624048 1740 ntBASIC19.56■□□□□ 0.72
HMGCS2P54868 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGCS2P54868 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGCS2P54868 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms