Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.73■□□□□ 0.43
PTPN9P43378 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 HLA-A-201ENST00000376802 1334 ntBASIC17.72■□□□□ 0.43
PTPN9P43378 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.72■□□□□ 0.43
PTPN9P43378 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN9P43378 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN9P43378 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.72■□□□□ 0.43
PTPN9P43378 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PTPN9P43378 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.72■□□□□ 0.43
PTPN9P43378 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
PTPN9P43378 NKILA-202ENST00000614771 2598 ntBASIC17.72■□□□□ 0.43
PTPN9P43378 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PTPN9P43378 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN9P43378 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN9P43378 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
PTPN9P43378 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN9P43378 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.72■□□□□ 0.43
PTPN9P43378 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.72■□□□□ 0.43
PTPN9P43378 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN9P43378 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.72■□□□□ 0.43
PTPN9P43378 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.72■□□□□ 0.43
PTPN9P43378 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.72■□□□□ 0.43
PTPN9P43378 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.72■□□□□ 0.43
PTPN9P43378 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN9P43378 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
PTPN9P43378 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.72■□□□□ 0.43
PTPN9P43378 LINC00895-201ENST00000629028 1637 ntBASIC17.72■□□□□ 0.43
PTPN9P43378 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
PTPN9P43378 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN9P43378 AC078925.2-201ENST00000624013 1973 ntBASIC17.71■□□□□ 0.43
PTPN9P43378 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN9P43378 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN9P43378 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
PTPN9P43378 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
PTPN9P43378 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.71■□□□□ 0.43
PTPN9P43378 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.71■□□□□ 0.43
PTPN9P43378 AC092910.1-201ENST00000482027 1129 ntBASIC17.71■□□□□ 0.43
PTPN9P43378 AC093909.1-201ENST00000504731 1122 ntBASIC17.71■□□□□ 0.43
PTPN9P43378 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.71■□□□□ 0.43
PTPN9P43378 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.71■□□□□ 0.43
PTPN9P43378 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.71■□□□□ 0.43
PTPN9P43378 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.71■□□□□ 0.43
PTPN9P43378 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN9P43378 AC116407.3-201ENST00000623905 1129 ntBASIC17.71■□□□□ 0.43
PTPN9P43378 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.71■□□□□ 0.43
PTPN9P43378 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN9P43378 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN9P43378 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN9P43378 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN9P43378 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN9P43378 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN9P43378 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN9P43378 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.71■□□□□ 0.43
PTPN9P43378 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.71■□□□□ 0.43
PTPN9P43378 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN9P43378 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.7■□□□□ 0.42
PTPN9P43378 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.7■□□□□ 0.42
PTPN9P43378 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
PTPN9P43378 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PTPN9P43378 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.7■□□□□ 0.42
PTPN9P43378 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.7■□□□□ 0.42
PTPN9P43378 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
PTPN9P43378 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
PTPN9P43378 AGGF1P2-201ENST00000426656 2106 ntBASIC17.7■□□□□ 0.42
PTPN9P43378 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PTPN9P43378 AC098831.1-202ENST00000438821 336 ntBASIC17.7■□□□□ 0.42
PTPN9P43378 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
PTPN9P43378 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.7■□□□□ 0.42
PTPN9P43378 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.7■□□□□ 0.42
PTPN9P43378 AC107918.2-201ENST00000530817 355 ntBASIC17.7■□□□□ 0.42
PTPN9P43378 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PTPN9P43378 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.7■□□□□ 0.42
PTPN9P43378 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.7■□□□□ 0.42
PTPN9P43378 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
PTPN9P43378 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.7■□□□□ 0.42
PTPN9P43378 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.7■□□□□ 0.42
PTPN9P43378 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
PTPN9P43378 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.7■□□□□ 0.42
PTPN9P43378 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.7■□□□□ 0.42
PTPN9P43378 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms