Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
BDNFP23560 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.97■□□□□ 0.47
BDNFP23560 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BDNFP23560 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BDNFP23560 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BDNFP23560 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
BDNFP23560 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
BDNFP23560 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.96■□□□□ 0.47
BDNFP23560 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.96■□□□□ 0.47
BDNFP23560 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.96■□□□□ 0.47
BDNFP23560 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
BDNFP23560 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 LINC02012-201ENST00000608206 1725 ntBASIC17.96■□□□□ 0.47
BDNFP23560 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.96■□□□□ 0.47
BDNFP23560 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
BDNFP23560 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.96■□□□□ 0.47
BDNFP23560 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
BDNFP23560 AC074386.1-202ENST00000463561 864 ntBASIC17.96■□□□□ 0.47
BDNFP23560 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.96■□□□□ 0.47
BDNFP23560 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.96■□□□□ 0.47
BDNFP23560 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.96■□□□□ 0.47
BDNFP23560 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.96■□□□□ 0.47
BDNFP23560 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.96■□□□□ 0.47
BDNFP23560 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.96■□□□□ 0.47
BDNFP23560 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.96■□□□□ 0.47
BDNFP23560 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.96■□□□□ 0.47
BDNFP23560 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
BDNFP23560 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
BDNFP23560 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
BDNFP23560 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.96■□□□□ 0.46
BDNFP23560 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
BDNFP23560 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
BDNFP23560 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BDNFP23560 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BDNFP23560 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BDNFP23560 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
BDNFP23560 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BDNFP23560 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.95■□□□□ 0.46
BDNFP23560 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
BDNFP23560 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.95■□□□□ 0.46
BDNFP23560 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.95■□□□□ 0.46
BDNFP23560 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.95■□□□□ 0.46
BDNFP23560 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.95■□□□□ 0.46
BDNFP23560 ALG1L5P-201ENST00000482043 771 ntBASIC17.95■□□□□ 0.46
BDNFP23560 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
BDNFP23560 AL078644.1-201ENST00000609881 752 ntBASIC17.95■□□□□ 0.46
BDNFP23560 AC092053.1-201ENST00000605787 1936 ntBASIC17.95■□□□□ 0.46
BDNFP23560 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BDNFP23560 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
BDNFP23560 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.95■□□□□ 0.46
BDNFP23560 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BDNFP23560 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BDNFP23560 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.95■□□□□ 0.46
BDNFP23560 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BDNFP23560 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
BDNFP23560 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
BDNFP23560 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
BDNFP23560 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.94■□□□□ 0.46
BDNFP23560 AL023806.1-201ENST00000603994 1649 ntBASIC17.94■□□□□ 0.46
BDNFP23560 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
BDNFP23560 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.94■□□□□ 0.46
BDNFP23560 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.94■□□□□ 0.46
BDNFP23560 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.94■□□□□ 0.46
BDNFP23560 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.94■□□□□ 0.46
BDNFP23560 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
BDNFP23560 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.94■□□□□ 0.46
BDNFP23560 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.94■□□□□ 0.46
BDNFP23560 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.94■□□□□ 0.46
BDNFP23560 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
BDNFP23560 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.94■□□□□ 0.46
BDNFP23560 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.94■□□□□ 0.46
BDNFP23560 AC005829.1-201ENST00000570002 483 ntBASIC17.94■□□□□ 0.46
BDNFP23560 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.94■□□□□ 0.46
BDNFP23560 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
BDNFP23560 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms