Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL9A1P20849 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL9A1P20849 AL135999.2-201ENST00000622438 1686 ntBASIC17.44■□□□□ 0.38
COL9A1P20849 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.44■□□□□ 0.38
COL9A1P20849 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL9A1P20849 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.44■□□□□ 0.38
COL9A1P20849 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.44■□□□□ 0.38
COL9A1P20849 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL9A1P20849 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.44■□□□□ 0.38
COL9A1P20849 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.44■□□□□ 0.38
COL9A1P20849 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL9A1P20849 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL9A1P20849 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.43■□□□□ 0.38
COL9A1P20849 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL9A1P20849 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL9A1P20849 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.43■□□□□ 0.38
COL9A1P20849 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.43■□□□□ 0.38
COL9A1P20849 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL9A1P20849 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
COL9A1P20849 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL9A1P20849 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL9A1P20849 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL9A1P20849 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL9A1P20849 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.43■□□□□ 0.38
COL9A1P20849 RN7SL837P-201ENST00000463010 287 ntBASIC17.43■□□□□ 0.38
COL9A1P20849 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL9A1P20849 AC104989.1-201ENST00000519711 778 ntBASIC17.43■□□□□ 0.38
COL9A1P20849 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.43■□□□□ 0.38
COL9A1P20849 AC091489.1-201ENST00000563866 691 ntTSL 3 BASIC17.43■□□□□ 0.38
COL9A1P20849 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.43■□□□□ 0.38
COL9A1P20849 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.43■□□□□ 0.38
COL9A1P20849 AL118558.3-201ENST00000607414 1079 ntBASIC17.43■□□□□ 0.38
COL9A1P20849 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.43■□□□□ 0.38
COL9A1P20849 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL9A1P20849 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL9A1P20849 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
COL9A1P20849 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.43■□□□□ 0.38
COL9A1P20849 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
COL9A1P20849 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.43■□□□□ 0.38
COL9A1P20849 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
COL9A1P20849 AC046185.3-201ENST00000623228 1824 ntBASIC17.42■□□□□ 0.38
COL9A1P20849 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
COL9A1P20849 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.42■□□□□ 0.38
COL9A1P20849 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
COL9A1P20849 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.42■□□□□ 0.38
COL9A1P20849 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.42■□□□□ 0.38
COL9A1P20849 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.42■□□□□ 0.38
COL9A1P20849 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
COL9A1P20849 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
COL9A1P20849 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.42■□□□□ 0.38
COL9A1P20849 AC087499.6-201ENST00000411576 835 ntBASIC17.42■□□□□ 0.38
COL9A1P20849 SLC25A24P2-201ENST00000415059 510 ntBASIC17.42■□□□□ 0.38
COL9A1P20849 FAM185BP-201ENST00000443595 716 ntBASIC17.42■□□□□ 0.38
COL9A1P20849 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.42■□□□□ 0.38
COL9A1P20849 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.42■□□□□ 0.38
COL9A1P20849 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.42■□□□□ 0.38
COL9A1P20849 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.42■□□□□ 0.38
COL9A1P20849 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.42■□□□□ 0.38
COL9A1P20849 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.42■□□□□ 0.38
COL9A1P20849 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.42■□□□□ 0.38
COL9A1P20849 MIR4453-201ENST00000584019 89 ntBASIC17.42■□□□□ 0.38
COL9A1P20849 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 AC016629.1-201ENST00000596579 586 ntBASIC17.42■□□□□ 0.38
COL9A1P20849 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
COL9A1P20849 AC010326.4-201ENST00000604665 891 ntBASIC17.42■□□□□ 0.38
COL9A1P20849 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.42■□□□□ 0.38
COL9A1P20849 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.42■□□□□ 0.38
COL9A1P20849 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.42■□□□□ 0.38
COL9A1P20849 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 AKAP8P1-201ENST00000434743 1349 ntBASIC17.42■□□□□ 0.38
COL9A1P20849 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
COL9A1P20849 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.42■□□□□ 0.38
COL9A1P20849 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
COL9A1P20849 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.42■□□□□ 0.38
COL9A1P20849 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL9A1P20849 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.41■□□□□ 0.38
COL9A1P20849 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.41■□□□□ 0.38
COL9A1P20849 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.41■□□□□ 0.38
COL9A1P20849 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL9A1P20849 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
COL9A1P20849 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms