Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC22.33■■□□□ 1.16
COL3A1P02461 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC22.33■■□□□ 1.16
COL3A1P02461 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL3A1P02461 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
COL3A1P02461 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL3A1P02461 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL3A1P02461 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL3A1P02461 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC22.32■■□□□ 1.16
COL3A1P02461 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL3A1P02461 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC22.32■■□□□ 1.16
COL3A1P02461 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC22.32■■□□□ 1.16
COL3A1P02461 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL3A1P02461 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL3A1P02461 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
COL3A1P02461 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
COL3A1P02461 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC22.32■■□□□ 1.16
COL3A1P02461 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL3A1P02461 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC22.32■■□□□ 1.16
COL3A1P02461 METTL21AP1-201ENST00000438852 635 ntBASIC22.32■■□□□ 1.16
COL3A1P02461 STARD13-205ENST00000439831 945 ntTSL 2 BASIC22.32■■□□□ 1.16
COL3A1P02461 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC22.32■■□□□ 1.16
COL3A1P02461 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
COL3A1P02461 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC22.32■■□□□ 1.16
COL3A1P02461 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC22.32■■□□□ 1.16
COL3A1P02461 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC22.32■■□□□ 1.16
COL3A1P02461 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC22.32■■□□□ 1.16
COL3A1P02461 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC22.32■■□□□ 1.16
COL3A1P02461 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL3A1P02461 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC22.32■■□□□ 1.16
COL3A1P02461 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
COL3A1P02461 AC080080.1-201ENST00000625121 2420 ntBASIC22.32■■□□□ 1.16
COL3A1P02461 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL3A1P02461 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL3A1P02461 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL3A1P02461 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
COL3A1P02461 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
COL3A1P02461 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC22.31■■□□□ 1.16
COL3A1P02461 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
COL3A1P02461 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL3A1P02461 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL3A1P02461 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL3A1P02461 GGT4P-201ENST00000623672 1708 ntBASIC22.31■■□□□ 1.16
COL3A1P02461 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL3A1P02461 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
COL3A1P02461 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC22.31■■□□□ 1.16
COL3A1P02461 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
COL3A1P02461 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL3A1P02461 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC22.31■■□□□ 1.16
COL3A1P02461 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC22.31■■□□□ 1.16
COL3A1P02461 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC22.31■■□□□ 1.16
COL3A1P02461 AC084121.4-201ENST00000641598 221 ntBASIC22.31■■□□□ 1.16
COL3A1P02461 AF228730.8-201ENST00000642140 221 ntBASIC22.31■■□□□ 1.16
COL3A1P02461 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
COL3A1P02461 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
COL3A1P02461 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL3A1P02461 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC22.31■■□□□ 1.16
COL3A1P02461 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC22.31■■□□□ 1.16
COL3A1P02461 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL3A1P02461 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL3A1P02461 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
COL3A1P02461 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC22.31■■□□□ 1.16
COL3A1P02461 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
COL3A1P02461 AL603756.1-201ENST00000606511 2163 ntBASIC22.31■■□□□ 1.16
COL3A1P02461 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC22.3■■□□□ 1.16
COL3A1P02461 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC22.3■■□□□ 1.16
COL3A1P02461 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC22.3■■□□□ 1.16
COL3A1P02461 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC22.3■■□□□ 1.16
COL3A1P02461 GGCT-205ENST00000409436 954 ntTSL 3 BASIC22.3■■□□□ 1.16
COL3A1P02461 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC22.3■■□□□ 1.16
COL3A1P02461 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 SPDYE11-202ENST00000450699 704 ntBASIC22.3■■□□□ 1.16
COL3A1P02461 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 LINC01225-203ENST00000563550 1244 ntBASIC22.3■■□□□ 1.16
COL3A1P02461 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC22.3■■□□□ 1.16
COL3A1P02461 SPDYE9P-201ENST00000570642 692 ntBASIC22.3■■□□□ 1.16
COL3A1P02461 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC22.3■■□□□ 1.16
COL3A1P02461 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
COL3A1P02461 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
COL3A1P02461 SPDYE10P-202ENST00000612005 668 ntBASIC22.3■■□□□ 1.16
COL3A1P02461 SPDYE8P-202ENST00000612377 668 ntBASIC22.3■■□□□ 1.16
COL3A1P02461 AL161645.1-201ENST00000622716 1255 ntBASIC22.3■■□□□ 1.16
COL3A1P02461 AP001350.2-201ENST00000625104 1094 ntBASIC22.3■■□□□ 1.16
COL3A1P02461 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC22.3■■□□□ 1.16
COL3A1P02461 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC22.3■■□□□ 1.16
COL3A1P02461 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC22.3■■□□□ 1.16
COL3A1P02461 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC22.3■■□□□ 1.16
COL3A1P02461 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC22.3■■□□□ 1.16
COL3A1P02461 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL3A1P02461 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms