Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL2A1P02458 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
COL2A1P02458 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
COL2A1P02458 SNX33P1-201ENST00000592116 1762 ntBASIC19.71■□□□□ 0.75
COL2A1P02458 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.71■□□□□ 0.75
COL2A1P02458 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.71■□□□□ 0.75
COL2A1P02458 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.71■□□□□ 0.75
COL2A1P02458 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.71■□□□□ 0.75
COL2A1P02458 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
COL2A1P02458 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC19.71■□□□□ 0.75
COL2A1P02458 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC19.71■□□□□ 0.75
COL2A1P02458 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.71■□□□□ 0.75
COL2A1P02458 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.71■□□□□ 0.75
COL2A1P02458 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.71■□□□□ 0.75
COL2A1P02458 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
COL2A1P02458 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL2A1P02458 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL2A1P02458 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL2A1P02458 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19.7■□□□□ 0.74
COL2A1P02458 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL2A1P02458 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL2A1P02458 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.7■□□□□ 0.74
COL2A1P02458 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.7■□□□□ 0.74
COL2A1P02458 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL2A1P02458 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL2A1P02458 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL2A1P02458 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL2A1P02458 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL2A1P02458 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.7■□□□□ 0.74
COL2A1P02458 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.7■□□□□ 0.74
COL2A1P02458 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC19.7■□□□□ 0.74
COL2A1P02458 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC19.7■□□□□ 0.74
COL2A1P02458 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL2A1P02458 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
COL2A1P02458 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL2A1P02458 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC19.7■□□□□ 0.74
COL2A1P02458 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL2A1P02458 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
COL2A1P02458 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL2A1P02458 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.7■□□□□ 0.74
COL2A1P02458 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL2A1P02458 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL2A1P02458 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.7■□□□□ 0.74
COL2A1P02458 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.69■□□□□ 0.74
COL2A1P02458 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL2A1P02458 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC19.69■□□□□ 0.74
COL2A1P02458 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.69■□□□□ 0.74
COL2A1P02458 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL2A1P02458 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL2A1P02458 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL2A1P02458 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL2A1P02458 HLA-H-201ENST00000383620 1096 ntBASIC19.69■□□□□ 0.74
COL2A1P02458 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.69■□□□□ 0.74
COL2A1P02458 PP14571-201ENST00000404327 934 ntTSL 2 BASIC19.69■□□□□ 0.74
COL2A1P02458 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL2A1P02458 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL2A1P02458 UGT1A2P-201ENST00000454886 866 ntBASIC19.69■□□□□ 0.74
COL2A1P02458 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC19.69■□□□□ 0.74
COL2A1P02458 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC19.69■□□□□ 0.74
COL2A1P02458 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
COL2A1P02458 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC19.69■□□□□ 0.74
COL2A1P02458 AC138761.1-201ENST00000584393 385 ntBASIC19.69■□□□□ 0.74
COL2A1P02458 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC19.69■□□□□ 0.74
COL2A1P02458 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.69■□□□□ 0.74
COL2A1P02458 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
COL2A1P02458 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL2A1P02458 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL2A1P02458 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL2A1P02458 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL2A1P02458 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL2A1P02458 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
COL2A1P02458 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
COL2A1P02458 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL2A1P02458 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL2A1P02458 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL2A1P02458 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL2A1P02458 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL2A1P02458 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC19.68■□□□□ 0.74
COL2A1P02458 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC19.68■□□□□ 0.74
COL2A1P02458 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC19.68■□□□□ 0.74
COL2A1P02458 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.68■□□□□ 0.74
COL2A1P02458 AC002472.2-201ENST00000442739 958 ntBASIC19.68■□□□□ 0.74
COL2A1P02458 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.68■□□□□ 0.74
COL2A1P02458 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC19.68■□□□□ 0.74
COL2A1P02458 AC097493.3-201ENST00000509725 367 ntBASIC19.68■□□□□ 0.74
COL2A1P02458 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms