Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.62■□□□□ 0.25
TNFP01375 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.62■□□□□ 0.25
TNFP01375 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.62■□□□□ 0.25
TNFP01375 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.62■□□□□ 0.25
TNFP01375 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.62■□□□□ 0.25
TNFP01375 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.62■□□□□ 0.25
TNFP01375 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.62■□□□□ 0.25
TNFP01375 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.62■□□□□ 0.25
TNFP01375 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.62■□□□□ 0.25
TNFP01375 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TNFP01375 AL121761.2-201ENST00000598007 1648 ntBASIC16.62■□□□□ 0.25
TNFP01375 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
TNFP01375 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.62■□□□□ 0.25
TNFP01375 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
TNFP01375 TOP3BP1-201ENST00000420768 1380 ntBASIC16.62■□□□□ 0.25
TNFP01375 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFP01375 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
TNFP01375 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
TNFP01375 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFP01375 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFP01375 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 HCG4-201ENST00000418983 998 ntBASIC16.61■□□□□ 0.25
TNFP01375 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFP01375 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFP01375 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
TNFP01375 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.61■□□□□ 0.25
TNFP01375 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 AC018470.1-201ENST00000624790 3129 ntBASIC16.61■□□□□ 0.25
TNFP01375 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFP01375 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.61■□□□□ 0.25
TNFP01375 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
TNFP01375 AL021920.2-201ENST00000624828 1351 ntBASIC16.61■□□□□ 0.25
TNFP01375 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.61■□□□□ 0.25
TNFP01375 AC007613.1-201ENST00000572811 2597 ntBASIC16.61■□□□□ 0.25
TNFP01375 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.61■□□□□ 0.25
TNFP01375 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TNFP01375 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
TNFP01375 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.6■□□□□ 0.25
TNFP01375 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TNFP01375 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.6■□□□□ 0.25
TNFP01375 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.6■□□□□ 0.25
TNFP01375 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.6■□□□□ 0.25
TNFP01375 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.6■□□□□ 0.25
TNFP01375 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.6■□□□□ 0.25
TNFP01375 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.6■□□□□ 0.25
TNFP01375 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.6■□□□□ 0.25
TNFP01375 AC027796.2-201ENST00000575326 344 ntBASIC16.6■□□□□ 0.25
TNFP01375 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.6■□□□□ 0.25
TNFP01375 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.6■□□□□ 0.25
TNFP01375 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.6■□□□□ 0.25
TNFP01375 AC026120.1-201ENST00000611536 926 ntBASIC16.6■□□□□ 0.25
TNFP01375 AL513210.1-201ENST00000629608 234 ntBASIC16.6■□□□□ 0.25
TNFP01375 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.6■□□□□ 0.25
TNFP01375 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
TNFP01375 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
TNFP01375 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TNFP01375 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.6■□□□□ 0.25
TNFP01375 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TNFP01375 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFP01375 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TNFP01375 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
TNFP01375 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TNFP01375 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
TNFP01375 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFP01375 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFP01375 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TNFP01375 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms