Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC14.34□□□□□ -0.11
ABCA1O95477 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
ABCA1O95477 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC14.34□□□□□ -0.11
ABCA1O95477 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
ABCA1O95477 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
ABCA1O95477 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 DDT-204ENST00000404092 805 ntTSL 3 BASIC14.34□□□□□ -0.11
ABCA1O95477 KRT18P32-201ENST00000424695 1287 ntBASIC14.34□□□□□ -0.11
ABCA1O95477 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.34□□□□□ -0.11
ABCA1O95477 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.34□□□□□ -0.11
ABCA1O95477 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
ABCA1O95477 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
ABCA1O95477 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.34□□□□□ -0.11
ABCA1O95477 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
ABCA1O95477 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
ABCA1O95477 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
ABCA1O95477 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
ABCA1O95477 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
ABCA1O95477 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC14.34□□□□□ -0.11
ABCA1O95477 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
ABCA1O95477 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
ABCA1O95477 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
ABCA1O95477 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.34□□□□□ -0.11
ABCA1O95477 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
ABCA1O95477 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.34□□□□□ -0.11
ABCA1O95477 AQP6-205ENST00000618286 829 ntTSL 5 BASIC14.34□□□□□ -0.11
ABCA1O95477 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC14.34□□□□□ -0.11
ABCA1O95477 LINC00628-201ENST00000628516 1289 ntBASIC14.34□□□□□ -0.11
ABCA1O95477 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
ABCA1O95477 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
ABCA1O95477 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
ABCA1O95477 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
ABCA1O95477 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
ABCA1O95477 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
ABCA1O95477 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
ABCA1O95477 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
ABCA1O95477 POR-209ENST00000439269 1858 ntTSL 2 BASIC14.33□□□□□ -0.11
ABCA1O95477 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
ABCA1O95477 AC244107.1-201ENST00000442033 332 ntBASIC14.33□□□□□ -0.12
ABCA1O95477 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC14.33□□□□□ -0.12
ABCA1O95477 AC069262.1-201ENST00000539058 672 ntBASIC14.33□□□□□ -0.12
ABCA1O95477 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC14.33□□□□□ -0.12
ABCA1O95477 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
ABCA1O95477 TK1-204ENST00000590430 683 ntTSL 3 BASIC14.33□□□□□ -0.12
ABCA1O95477 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
ABCA1O95477 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
ABCA1O95477 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
ABCA1O95477 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC14.33□□□□□ -0.12
ABCA1O95477 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
ABCA1O95477 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
ABCA1O95477 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC14.33□□□□□ -0.12
ABCA1O95477 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
ABCA1O95477 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
ABCA1O95477 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.33□□□□□ -0.12
ABCA1O95477 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
ABCA1O95477 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
ABCA1O95477 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 COX5BP2-201ENST00000392354 334 ntBASIC14.32□□□□□ -0.12
ABCA1O95477 ACTG1P4-201ENST00000425123 1122 ntBASIC14.32□□□□□ -0.12
ABCA1O95477 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.32□□□□□ -0.12
ABCA1O95477 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 AC015911.4-201ENST00000588022 1070 ntBASIC14.32□□□□□ -0.12
ABCA1O95477 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
ABCA1O95477 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
ABCA1O95477 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC14.32□□□□□ -0.12
ABCA1O95477 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms