Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 RPS24-214ENST00000613865 538 ntTSL 5 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL6A5A8TX70 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC13.06□□□□□ -0.32
COL6A5A8TX70 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 PODN-203ENST00000395871 2744 ntTSL 5 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 RPL17P11-201ENST00000417593 544 ntBASIC13.05□□□□□ -0.32
COL6A5A8TX70 REEP1-202ENST00000453231 940 ntTSL 2 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 AC025048.3-201ENST00000590609 569 ntBASIC13.05□□□□□ -0.32
COL6A5A8TX70 AL031055.1-201ENST00000606362 631 ntBASIC13.05□□□□□ -0.32
COL6A5A8TX70 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC13.05□□□□□ -0.32
COL6A5A8TX70 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL6A5A8TX70 AL353732.1-201ENST00000569618 1459 ntBASIC13.04□□□□□ -0.32
COL6A5A8TX70 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 AL096828.2-201ENST00000567259 1965 ntBASIC13.04□□□□□ -0.32
COL6A5A8TX70 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 FOXO1B-201ENST00000504678 1527 ntBASIC13.04□□□□□ -0.32
COL6A5A8TX70 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 MPV17-204ENST00000399052 749 ntTSL 4 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 YBX1P6-201ENST00000442962 1002 ntBASIC13.04□□□□□ -0.32
COL6A5A8TX70 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 AL033527.5-202ENST00000641632 1098 ntBASIC13.04□□□□□ -0.32
COL6A5A8TX70 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.04□□□□□ -0.32
COL6A5A8TX70 AC092337.1-201ENST00000568699 1129 ntBASIC13.04□□□□□ -0.32
COL6A5A8TX70 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL6A5A8TX70 AC105021.1-202ENST00000570572 669 ntBASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms