Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 TUBB8P12-201ENST00000308911 1335 ntBASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 TUBB7P-202ENST00000428444 1305 ntBASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 TUBB8P7-204ENST00000567960 1332 ntBASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS29Q9UBQ0 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS29Q9UBQ0 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.22
VPS29Q9UBQ0 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.39■□□□□ 0.22
VPS29Q9UBQ0 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 RBM17P3-201ENST00000417687 1192 ntBASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 HCG4P8-203ENST00000443049 980 ntBASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 AL121772.3-201ENST00000610840 674 ntBASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.39■□□□□ 0.21
VPS29Q9UBQ0 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 PCDHB17P-201ENST00000539533 2393 ntBASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 AP002490.2-201ENST00000524791 560 ntBASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 AL732292.2-201ENST00000609649 430 ntBASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS29Q9UBQ0 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms