Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 PTCHD3P3-201ENST00000403073 906 ntBASIC18.31■□□□□ 0.52
SIX2Q9NPC8 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 ELK2BP-201ENST00000415014 1224 ntBASIC18.31■□□□□ 0.52
SIX2Q9NPC8 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 AP002490.2-201ENST00000524791 560 ntBASIC18.31■□□□□ 0.52
SIX2Q9NPC8 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SIX2Q9NPC8 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 AL021920.2-201ENST00000624828 1351 ntBASIC18.3■□□□□ 0.52
SIX2Q9NPC8 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.3■□□□□ 0.52
SIX2Q9NPC8 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 KRT18P56-201ENST00000507275 550 ntBASIC18.29■□□□□ 0.52
SIX2Q9NPC8 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SIX2Q9NPC8 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 SCARNA2-201ENST00000458748 420 ntBASIC18.28■□□□□ 0.52
SIX2Q9NPC8 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
SIX2Q9NPC8 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms