Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.16■□□□□ 0.02
MMP28Q9H239 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC15.16■□□□□ 0.02
MMP28Q9H239 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 TERF1P1-201ENST00000311003 1181 ntBASIC15.16■□□□□ 0.02
MMP28Q9H239 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
MMP28Q9H239 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
MMP28Q9H239 SLC25A3P1-201ENST00000443844 931 ntBASIC15.16■□□□□ 0.02
MMP28Q9H239 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC15.16■□□□□ 0.02
MMP28Q9H239 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC15.16■□□□□ 0.02
MMP28Q9H239 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC15.16■□□□□ 0.02
MMP28Q9H239 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC15.16■□□□□ 0.02
MMP28Q9H239 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC15.16■□□□□ 0.02
MMP28Q9H239 RMI2-205ENST00000576027 818 ntTSL 2 BASIC15.16■□□□□ 0.02
MMP28Q9H239 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC15.16■□□□□ 0.02
MMP28Q9H239 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC15.16■□□□□ 0.02
MMP28Q9H239 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
MMP28Q9H239 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
MMP28Q9H239 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.16■□□□□ 0.02
MMP28Q9H239 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
MMP28Q9H239 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.16■□□□□ 0.02
MMP28Q9H239 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MMP28Q9H239 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC15.15■□□□□ 0.02
MMP28Q9H239 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
MMP28Q9H239 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
MMP28Q9H239 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
MMP28Q9H239 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.15■□□□□ 0.02
MMP28Q9H239 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 ILF2-202ENST00000368681 726 ntTSL 2 BASIC15.15■□□□□ 0.02
MMP28Q9H239 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC15.15■□□□□ 0.02
MMP28Q9H239 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC15.15■□□□□ 0.02
MMP28Q9H239 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC15.15■□□□□ 0.02
MMP28Q9H239 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC15.15■□□□□ 0.02
MMP28Q9H239 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC15.15■□□□□ 0.02
MMP28Q9H239 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC15.15■□□□□ 0.02
MMP28Q9H239 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
MMP28Q9H239 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
MMP28Q9H239 KRT8P7-201ENST00000533003 1432 ntBASIC15.15■□□□□ 0.02
MMP28Q9H239 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.15■□□□□ 0.02
MMP28Q9H239 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.15■□□□□ 0.02
MMP28Q9H239 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 AC063926.3-201ENST00000624734 5658 ntBASIC15.15■□□□□ 0.02
MMP28Q9H239 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MMP28Q9H239 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
MMP28Q9H239 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
MMP28Q9H239 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC15.14■□□□□ 0.01
MMP28Q9H239 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC15.14■□□□□ 0.01
MMP28Q9H239 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC15.14■□□□□ 0.01
MMP28Q9H239 DUTP2-201ENST00000519164 463 ntBASIC15.14■□□□□ 0.01
MMP28Q9H239 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.14■□□□□ 0.01
MMP28Q9H239 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
MMP28Q9H239 AC016396.2-201ENST00000562575 1417 ntBASIC15.14■□□□□ 0.01
MMP28Q9H239 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC15.14■□□□□ 0.01
MMP28Q9H239 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms