Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 AC003669.1-201ENST00000334569 611 ntBASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 AC105339.3-201ENST00000560043 636 ntBASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 AC097637.2-201ENST00000624096 1997 ntBASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 AC093525.9-201ENST00000624961 1746 ntBASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4CQ96CF2 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.39■□□□□ 0.86
CHMP4CQ96CF2 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CHMP4CQ96CF2 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
CHMP4CQ96CF2 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.39■□□□□ 0.86
CHMP4CQ96CF2 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
CHMP4CQ96CF2 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
CHMP4CQ96CF2 LINC02012-201ENST00000608206 1725 ntBASIC20.39■□□□□ 0.86
CHMP4CQ96CF2 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.39■□□□□ 0.86
CHMP4CQ96CF2 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CHMP4CQ96CF2 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.39■□□□□ 0.86
CHMP4CQ96CF2 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 AC006504.4-201ENST00000592118 1568 ntBASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHMP4CQ96CF2 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 AC007967.2-201ENST00000432613 625 ntBASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 IGHV3-22-201ENST00000520721 359 ntBASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CHMP4CQ96CF2 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms