Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CPNE4Q96A23 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CPNE4Q96A23 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CPNE4Q96A23 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.38■□□□□ 0.05
CPNE4Q96A23 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CPNE4Q96A23 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CPNE4Q96A23 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CPNE4Q96A23 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CPNE4Q96A23 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CPNE4Q96A23 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.38■□□□□ 0.05
CPNE4Q96A23 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
CPNE4Q96A23 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CPNE4Q96A23 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CPNE4Q96A23 ZNF259P1-201ENST00000407656 1365 ntBASIC15.37■□□□□ 0.05
CPNE4Q96A23 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CPNE4Q96A23 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CPNE4Q96A23 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CPNE4Q96A23 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CPNE4Q96A23 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 AL023806.1-201ENST00000603994 1649 ntBASIC15.37■□□□□ 0.05
CPNE4Q96A23 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CPNE4Q96A23 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CPNE4Q96A23 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.37■□□□□ 0.05
CPNE4Q96A23 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 AL022342.1-201ENST00000400363 863 ntBASIC15.37■□□□□ 0.05
CPNE4Q96A23 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 IGHV3-65-201ENST00000523210 341 ntBASIC15.37■□□□□ 0.05
CPNE4Q96A23 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CPNE4Q96A23 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 AC145285.3-201ENST00000564603 959 ntBASIC15.37■□□□□ 0.05
CPNE4Q96A23 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CPNE4Q96A23 Z83851.2-201ENST00000609564 659 ntBASIC15.37■□□□□ 0.05
CPNE4Q96A23 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CPNE4Q96A23 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CPNE4Q96A23 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC15.37■□□□□ 0.05
CPNE4Q96A23 PI4KAP1-204ENST00000612579 1703 ntBASIC15.37■□□□□ 0.05
CPNE4Q96A23 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CPNE4Q96A23 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CPNE4Q96A23 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CPNE4Q96A23 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CPNE4Q96A23 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CPNE4Q96A23 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CPNE4Q96A23 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CPNE4Q96A23 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CPNE4Q96A23 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 RPL13AP23-201ENST00000480739 586 ntBASIC15.36■□□□□ 0.05
CPNE4Q96A23 AC108751.1-201ENST00000490852 363 ntBASIC15.36■□□□□ 0.05
CPNE4Q96A23 RNA5SP415-201ENST00000517246 115 ntBASIC15.36■□□□□ 0.05
CPNE4Q96A23 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 UNC93B6-202ENST00000528242 690 ntBASIC15.36■□□□□ 0.05
CPNE4Q96A23 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 TERC-201ENST00000602385 541 ntBASIC15.36■□□□□ 0.05
CPNE4Q96A23 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CPNE4Q96A23 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CPNE4Q96A23 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CPNE4Q96A23 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CPNE4Q96A23 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CPNE4Q96A23 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
CPNE4Q96A23 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.35■□□□□ 0.05
CPNE4Q96A23 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
CPNE4Q96A23 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.35■□□□□ 0.05
CPNE4Q96A23 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CPNE4Q96A23 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.35■□□□□ 0.05
CPNE4Q96A23 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms