Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC26.47■■□□□ 1.83
VPS8Q8N3P4 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 AL645728.1-201ENST00000366221 2101 ntBASIC26.46■■□□□ 1.83
VPS8Q8N3P4 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
VPS8Q8N3P4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
VPS8Q8N3P4 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
VPS8Q8N3P4 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
VPS8Q8N3P4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
VPS8Q8N3P4 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.83
VPS8Q8N3P4 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 PMS2P4-201ENST00000412466 1052 ntBASIC26.45■■□□□ 1.82
VPS8Q8N3P4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 AC092183.1-201ENST00000469884 875 ntBASIC26.45■■□□□ 1.82
VPS8Q8N3P4 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 KRT8P48-201ENST00000515599 1220 ntBASIC26.45■■□□□ 1.82
VPS8Q8N3P4 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 AP001350.2-201ENST00000625104 1094 ntBASIC26.45■■□□□ 1.82
VPS8Q8N3P4 AC105339.1-204ENST00000636249 355 ntBASIC26.45■■□□□ 1.82
VPS8Q8N3P4 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC26.45■■□□□ 1.82
VPS8Q8N3P4 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 AL671710.1-201ENST00000610245 2349 ntBASIC26.44■■□□□ 1.82
VPS8Q8N3P4 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 AL139011.1-202ENST00000642063 584 ntBASIC26.44■■□□□ 1.82
VPS8Q8N3P4 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 AC005915.1-201ENST00000624912 2018 ntBASIC26.44■■□□□ 1.82
VPS8Q8N3P4 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
VPS8Q8N3P4 PC-204ENST00000524491 1714 ntTSL 2 BASIC26.43■■□□□ 1.82
VPS8Q8N3P4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC26.43■■□□□ 1.82
VPS8Q8N3P4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC26.43■■□□□ 1.82
VPS8Q8N3P4 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
VPS8Q8N3P4 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
VPS8Q8N3P4 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
VPS8Q8N3P4 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms