Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC65Q8IXS2 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC65Q8IXS2 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC65Q8IXS2 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC65Q8IXS2 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CCDC65Q8IXS2 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC65Q8IXS2 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC65Q8IXS2 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CCDC65Q8IXS2 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC65Q8IXS2 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC65Q8IXS2 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC65Q8IXS2 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC65Q8IXS2 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 LAGE3P1-201ENST00000425356 484 ntBASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 AL450487.1-201ENST00000426799 995 ntBASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 AL121912.1-201ENST00000603683 238 ntBASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC65Q8IXS2 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 AC243591.1-201ENST00000452967 1364 ntBASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 AC006557.2-201ENST00000592985 1240 ntBASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 AC107918.4-202ENST00000641623 219 ntBASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
CCDC65Q8IXS2 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 AC106886.4-201ENST00000623557 2502 ntBASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 AC004870.1-201ENST00000315132 882 ntBASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 RN7SL510P-201ENST00000581311 263 ntBASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 TUBB8P12-201ENST00000308911 1335 ntBASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 TUBB7P-202ENST00000428444 1305 ntBASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 TUBB8P7-204ENST00000567960 1332 ntBASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC65Q8IXS2 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms