Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK3Q8IV63 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.7■□□□□ 0.26
VRK3Q8IV63 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK3Q8IV63 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK3Q8IV63 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VRK3Q8IV63 PCDHB17P-201ENST00000539533 2393 ntBASIC16.7■□□□□ 0.26
VRK3Q8IV63 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VRK3Q8IV63 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK3Q8IV63 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.7■□□□□ 0.26
VRK3Q8IV63 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK3Q8IV63 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK3Q8IV63 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
VRK3Q8IV63 SLC25A6P2-201ENST00000497974 877 ntBASIC16.7■□□□□ 0.26
VRK3Q8IV63 IGHV3-22-201ENST00000520721 359 ntBASIC16.7■□□□□ 0.26
VRK3Q8IV63 IGHV3-65-201ENST00000523210 341 ntBASIC16.7■□□□□ 0.26
VRK3Q8IV63 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.7■□□□□ 0.26
VRK3Q8IV63 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.7■□□□□ 0.26
VRK3Q8IV63 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.7■□□□□ 0.26
VRK3Q8IV63 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
VRK3Q8IV63 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.7■□□□□ 0.26
VRK3Q8IV63 AC005593.1-201ENST00000624894 515 ntBASIC16.7■□□□□ 0.26
VRK3Q8IV63 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK3Q8IV63 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK3Q8IV63 AL121761.2-201ENST00000598007 1648 ntBASIC16.7■□□□□ 0.26
VRK3Q8IV63 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
VRK3Q8IV63 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
VRK3Q8IV63 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.7■□□□□ 0.26
VRK3Q8IV63 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VRK3Q8IV63 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VRK3Q8IV63 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VRK3Q8IV63 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 RNF216P1-203ENST00000404404 2427 ntBASIC16.69■□□□□ 0.26
VRK3Q8IV63 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.69■□□□□ 0.26
VRK3Q8IV63 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VRK3Q8IV63 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VRK3Q8IV63 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.68■□□□□ 0.26
VRK3Q8IV63 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.68■□□□□ 0.26
VRK3Q8IV63 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
VRK3Q8IV63 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.68■□□□□ 0.26
VRK3Q8IV63 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 AC002310.6-201ENST00000624451 1377 ntBASIC16.68■□□□□ 0.26
VRK3Q8IV63 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
VRK3Q8IV63 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.68■□□□□ 0.26
VRK3Q8IV63 AC108073.2-201ENST00000464002 357 ntBASIC16.68■□□□□ 0.26
VRK3Q8IV63 AC093909.1-201ENST00000504731 1122 ntBASIC16.68■□□□□ 0.26
VRK3Q8IV63 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.68■□□□□ 0.26
VRK3Q8IV63 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.68■□□□□ 0.26
VRK3Q8IV63 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.68■□□□□ 0.26
VRK3Q8IV63 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
VRK3Q8IV63 AF228730.7-201ENST00000641842 219 ntBASIC16.68■□□□□ 0.26
VRK3Q8IV63 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms