Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SIGLEC16-201ENST00000599858 1437 ntBASIC16.45■□□□□ 0.22
COL28A1Q2UY09 FLJ13224-201ENST00000313737 1514 ntBASIC16.45■□□□□ 0.22
COL28A1Q2UY09 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 KRT18P65-201ENST00000439811 1286 ntBASIC16.45■□□□□ 0.22
COL28A1Q2UY09 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 KRT8P47-201ENST00000604727 1398 ntBASIC16.45■□□□□ 0.22
COL28A1Q2UY09 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.45■□□□□ 0.22
COL28A1Q2UY09 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 SIRPAP1-201ENST00000448467 1770 ntBASIC16.44■□□□□ 0.22
COL28A1Q2UY09 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 AC003669.1-201ENST00000334569 611 ntBASIC16.44■□□□□ 0.22
COL28A1Q2UY09 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 SPDYE21P-201ENST00000413323 827 ntBASIC16.44■□□□□ 0.22
COL28A1Q2UY09 AC007967.3-201ENST00000434308 558 ntBASIC16.44■□□□□ 0.22
COL28A1Q2UY09 FAM207CP-201ENST00000443486 507 ntBASIC16.44■□□□□ 0.22
COL28A1Q2UY09 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 CR383656.12-201ENST00000549567 513 ntBASIC16.44■□□□□ 0.22
COL28A1Q2UY09 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 REXO1L3P-201ENST00000622202 1288 ntBASIC16.44■□□□□ 0.22
COL28A1Q2UY09 AL358472.5-202ENST00000641448 1267 ntBASIC16.44■□□□□ 0.22
COL28A1Q2UY09 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
COL28A1Q2UY09 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 MIR943-201ENST00000401286 94 ntBASIC16.43■□□□□ 0.22
COL28A1Q2UY09 ATP5G2P4-201ENST00000442175 420 ntBASIC16.43■□□□□ 0.22
COL28A1Q2UY09 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
COL28A1Q2UY09 AC112698.1-201ENST00000510299 916 ntBASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms