Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC14.68□□□□□ -0.06
ABCA4P78363 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC14.68□□□□□ -0.06
ABCA4P78363 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC14.68□□□□□ -0.06
ABCA4P78363 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
ABCA4P78363 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
ABCA4P78363 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
ABCA4P78363 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.68□□□□□ -0.06
ABCA4P78363 FAM207CP-201ENST00000443486 507 ntBASIC14.68□□□□□ -0.06
ABCA4P78363 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.68□□□□□ -0.06
ABCA4P78363 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
ABCA4P78363 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.68□□□□□ -0.06
ABCA4P78363 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.68□□□□□ -0.06
ABCA4P78363 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC14.68□□□□□ -0.06
ABCA4P78363 LINC01225-203ENST00000563550 1244 ntBASIC14.68□□□□□ -0.06
ABCA4P78363 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.68□□□□□ -0.06
ABCA4P78363 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14.68□□□□□ -0.06
ABCA4P78363 AL390955.2-201ENST00000603032 514 ntBASIC14.68□□□□□ -0.06
ABCA4P78363 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC14.68□□□□□ -0.06
ABCA4P78363 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.68□□□□□ -0.06
ABCA4P78363 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.68□□□□□ -0.06
ABCA4P78363 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
ABCA4P78363 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
ABCA4P78363 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
ABCA4P78363 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC14.68□□□□□ -0.06
ABCA4P78363 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
ABCA4P78363 AC008677.1-201ENST00000519230 1561 ntBASIC14.68□□□□□ -0.06
ABCA4P78363 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC14.68□□□□□ -0.06
ABCA4P78363 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC14.68□□□□□ -0.06
ABCA4P78363 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
ABCA4P78363 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
ABCA4P78363 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
ABCA4P78363 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.68□□□□□ -0.06
ABCA4P78363 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC14.67□□□□□ -0.06
ABCA4P78363 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
ABCA4P78363 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 WASH6P-202ENST00000359512 1437 ntBASIC14.67□□□□□ -0.06
ABCA4P78363 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.67□□□□□ -0.06
ABCA4P78363 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.67□□□□□ -0.06
ABCA4P78363 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.67□□□□□ -0.06
ABCA4P78363 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.67□□□□□ -0.06
ABCA4P78363 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.67□□□□□ -0.06
ABCA4P78363 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.67□□□□□ -0.06
ABCA4P78363 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC14.67□□□□□ -0.06
ABCA4P78363 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
ABCA4P78363 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC14.67□□□□□ -0.06
ABCA4P78363 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 INGX-202ENST00000489074 768 ntBASIC14.67□□□□□ -0.06
ABCA4P78363 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 AC107918.2-201ENST00000530817 355 ntBASIC14.67□□□□□ -0.06
ABCA4P78363 DUX4L27-201ENST00000554796 1261 ntBASIC14.67□□□□□ -0.06
ABCA4P78363 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 ABALON-201ENST00000629058 1903 ntBASIC14.67□□□□□ -0.06
ABCA4P78363 KRT18P55-202ENST00000578578 1546 ntBASIC14.67□□□□□ -0.06
ABCA4P78363 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC14.67□□□□□ -0.06
ABCA4P78363 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
ABCA4P78363 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC14.67□□□□□ -0.06
ABCA4P78363 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC14.66□□□□□ -0.06
ABCA4P78363 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC14.66□□□□□ -0.06
ABCA4P78363 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
ABCA4P78363 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC14.66□□□□□ -0.06
ABCA4P78363 HCG11-201ENST00000411553 5696 ntBASIC14.66□□□□□ -0.06
ABCA4P78363 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
ABCA4P78363 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
ABCA4P78363 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms