Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.83■□□□□ 0.12
RNF4P78317 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.83■□□□□ 0.12
RNF4P78317 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.83■□□□□ 0.12
RNF4P78317 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
RNF4P78317 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
RNF4P78317 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC15.83■□□□□ 0.12
RNF4P78317 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
RNF4P78317 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.83■□□□□ 0.12
RNF4P78317 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.83■□□□□ 0.12
RNF4P78317 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 LINC02012-201ENST00000608206 1725 ntBASIC15.82■□□□□ 0.12
RNF4P78317 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.82■□□□□ 0.12
RNF4P78317 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.82■□□□□ 0.12
RNF4P78317 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.82■□□□□ 0.12
RNF4P78317 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.82■□□□□ 0.12
RNF4P78317 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.82■□□□□ 0.12
RNF4P78317 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.82■□□□□ 0.12
RNF4P78317 RNA5SP416-201ENST00000516838 111 ntBASIC15.82■□□□□ 0.12
RNF4P78317 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.82■□□□□ 0.12
RNF4P78317 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.82■□□□□ 0.12
RNF4P78317 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.82■□□□□ 0.12
RNF4P78317 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.82■□□□□ 0.12
RNF4P78317 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
RNF4P78317 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
RNF4P78317 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.81■□□□□ 0.12
RNF4P78317 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
RNF4P78317 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
RNF4P78317 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
RNF4P78317 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
RNF4P78317 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.81■□□□□ 0.12
RNF4P78317 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.81■□□□□ 0.12
RNF4P78317 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.81■□□□□ 0.12
RNF4P78317 HCG4B-203ENST00000450128 991 ntBASIC15.81■□□□□ 0.12
RNF4P78317 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.81■□□□□ 0.12
RNF4P78317 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC15.81■□□□□ 0.12
RNF4P78317 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 SLC25A6P2-201ENST00000497974 877 ntBASIC15.81■□□□□ 0.12
RNF4P78317 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.81■□□□□ 0.12
RNF4P78317 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
RNF4P78317 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.81■□□□□ 0.12
RNF4P78317 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.81■□□□□ 0.12
RNF4P78317 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
RNF4P78317 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.81■□□□□ 0.12
RNF4P78317 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
RNF4P78317 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
RNF4P78317 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
RNF4P78317 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
RNF4P78317 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.8■□□□□ 0.12
RNF4P78317 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.8■□□□□ 0.12
RNF4P78317 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
RNF4P78317 PMS2P7-201ENST00000506558 1336 ntBASIC15.8■□□□□ 0.12
RNF4P78317 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms