Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC23.4■■□□□ 1.34
MSH6P52701 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC23.4■■□□□ 1.34
MSH6P52701 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC23.4■■□□□ 1.34
MSH6P52701 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC23.4■■□□□ 1.34
MSH6P52701 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
MSH6P52701 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
MSH6P52701 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
MSH6P52701 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
MSH6P52701 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC23.4■■□□□ 1.34
MSH6P52701 MTND6P24-201ENST00000440466 518 ntBASIC23.4■■□□□ 1.34
MSH6P52701 PARP8-218ENST00000513738 596 ntTSL 4 BASIC23.4■■□□□ 1.34
MSH6P52701 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC23.4■■□□□ 1.34
MSH6P52701 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC23.4■■□□□ 1.34
MSH6P52701 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
MSH6P52701 LITAF-210ENST00000571976 548 ntTSL 2 BASIC23.4■■□□□ 1.34
MSH6P52701 LITAF-214ENST00000574703 486 ntTSL 2 BASIC23.4■■□□□ 1.34
MSH6P52701 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC23.4■■□□□ 1.34
MSH6P52701 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC23.4■■□□□ 1.34
MSH6P52701 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC23.4■■□□□ 1.34
MSH6P52701 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
MSH6P52701 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
MSH6P52701 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC23.39■■□□□ 1.34
MSH6P52701 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
MSH6P52701 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC23.39■■□□□ 1.34
MSH6P52701 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.34
MSH6P52701 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC23.39■■□□□ 1.33
MSH6P52701 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.33
MSH6P52701 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC23.39■■□□□ 1.33
MSH6P52701 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC23.39■■□□□ 1.33
MSH6P52701 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
MSH6P52701 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC23.39■■□□□ 1.33
MSH6P52701 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
MSH6P52701 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
MSH6P52701 RPF1-202ENST00000370656 724 ntTSL 2 BASIC23.39■■□□□ 1.33
MSH6P52701 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC23.39■■□□□ 1.33
MSH6P52701 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC23.39■■□□□ 1.33
MSH6P52701 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC23.39■■□□□ 1.33
MSH6P52701 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC23.39■■□□□ 1.33
MSH6P52701 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
MSH6P52701 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC23.39■■□□□ 1.33
MSH6P52701 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC23.39■■□□□ 1.33
MSH6P52701 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC23.39■■□□□ 1.33
MSH6P52701 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
MSH6P52701 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
MSH6P52701 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
MSH6P52701 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
MSH6P52701 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
MSH6P52701 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
MSH6P52701 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
MSH6P52701 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
MSH6P52701 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
MSH6P52701 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC23.38■■□□□ 1.33
MSH6P52701 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC23.38■■□□□ 1.33
MSH6P52701 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
MSH6P52701 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC23.38■■□□□ 1.33
MSH6P52701 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
MSH6P52701 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
MSH6P52701 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC23.38■■□□□ 1.33
MSH6P52701 KRT223P-202ENST00000449164 1292 ntBASIC23.38■■□□□ 1.33
MSH6P52701 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC23.38■■□□□ 1.33
MSH6P52701 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC23.38■■□□□ 1.33
MSH6P52701 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
MSH6P52701 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC23.38■■□□□ 1.33
MSH6P52701 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC23.38■■□□□ 1.33
MSH6P52701 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
MSH6P52701 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC23.38■■□□□ 1.33
MSH6P52701 COX11-210ENST00000639671 696 ntBASIC23.38■■□□□ 1.33
MSH6P52701 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
MSH6P52701 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC23.37■■□□□ 1.33
MSH6P52701 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC23.37■■□□□ 1.33
MSH6P52701 FOXO1B-201ENST00000504678 1527 ntBASIC23.37■■□□□ 1.33
MSH6P52701 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC23.37■■□□□ 1.33
MSH6P52701 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
MSH6P52701 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC23.37■■□□□ 1.33
MSH6P52701 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
MSH6P52701 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
MSH6P52701 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 AL023806.1-201ENST00000603994 1649 ntBASIC23.37■■□□□ 1.33
MSH6P52701 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
MSH6P52701 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
MSH6P52701 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 SPDYE19P-201ENST00000338590 713 ntBASIC23.37■■□□□ 1.33
MSH6P52701 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC23.37■■□□□ 1.33
MSH6P52701 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC23.37■■□□□ 1.33
MSH6P52701 AL080243.2-201ENST00000418783 582 ntBASIC23.37■■□□□ 1.33
MSH6P52701 AC234783.1-201ENST00000441761 496 ntBASIC23.37■■□□□ 1.33
MSH6P52701 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 AP005482.1-201ENST00000563722 1273 ntBASIC23.37■■□□□ 1.33
MSH6P52701 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC23.37■■□□□ 1.33
MSH6P52701 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
MSH6P52701 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms