Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
XRCC1P18887 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.11■□□□□ 0.33
XRCC1P18887 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
XRCC1P18887 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.11■□□□□ 0.33
XRCC1P18887 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
XRCC1P18887 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.1■□□□□ 0.33
XRCC1P18887 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
XRCC1P18887 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
XRCC1P18887 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.1■□□□□ 0.33
XRCC1P18887 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
XRCC1P18887 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
XRCC1P18887 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
XRCC1P18887 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
XRCC1P18887 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
XRCC1P18887 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
XRCC1P18887 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.1■□□□□ 0.33
XRCC1P18887 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.1■□□□□ 0.33
XRCC1P18887 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
XRCC1P18887 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
XRCC1P18887 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.1■□□□□ 0.33
XRCC1P18887 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.1■□□□□ 0.33
XRCC1P18887 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.1■□□□□ 0.33
XRCC1P18887 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.1■□□□□ 0.33
XRCC1P18887 OR7E14P-202ENST00000530490 1290 ntBASIC17.1■□□□□ 0.33
XRCC1P18887 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.1■□□□□ 0.33
XRCC1P18887 AC109462.3-201ENST00000573934 613 ntBASIC17.1■□□□□ 0.33
XRCC1P18887 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
XRCC1P18887 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
XRCC1P18887 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.1■□□□□ 0.33
XRCC1P18887 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
XRCC1P18887 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.1■□□□□ 0.33
XRCC1P18887 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.1■□□□□ 0.33
XRCC1P18887 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.1■□□□□ 0.33
XRCC1P18887 PKD1P1-201ENST00000458669 6805 ntBASIC17.1■□□□□ 0.33
XRCC1P18887 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
XRCC1P18887 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.1■□□□□ 0.33
XRCC1P18887 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
XRCC1P18887 AC132938.5-201ENST00000624980 1813 ntBASIC17.1■□□□□ 0.33
XRCC1P18887 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.1■□□□□ 0.33
XRCC1P18887 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.1■□□□□ 0.33
XRCC1P18887 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.1■□□□□ 0.33
XRCC1P18887 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.09■□□□□ 0.33
XRCC1P18887 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
XRCC1P18887 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
XRCC1P18887 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.09■□□□□ 0.33
XRCC1P18887 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
XRCC1P18887 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.09■□□□□ 0.33
XRCC1P18887 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
XRCC1P18887 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
XRCC1P18887 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.09■□□□□ 0.33
XRCC1P18887 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
XRCC1P18887 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.09■□□□□ 0.33
XRCC1P18887 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
XRCC1P18887 AL590627.1-203ENST00000421194 1026 ntBASIC17.09■□□□□ 0.33
XRCC1P18887 AL020989.1-201ENST00000422979 469 ntBASIC17.09■□□□□ 0.33
XRCC1P18887 RPS2P1-201ENST00000434010 821 ntBASIC17.09■□□□□ 0.33
XRCC1P18887 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.09■□□□□ 0.33
XRCC1P18887 AC002558.1-201ENST00000488906 803 ntBASIC17.09■□□□□ 0.33
XRCC1P18887 IGHV3-52-201ENST00000519770 353 ntBASIC17.09■□□□□ 0.33
XRCC1P18887 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.09■□□□□ 0.33
XRCC1P18887 AC139887.3-201ENST00000568585 713 ntBASIC17.09■□□□□ 0.33
XRCC1P18887 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.09■□□□□ 0.33
XRCC1P18887 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.09■□□□□ 0.33
XRCC1P18887 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.09■□□□□ 0.33
XRCC1P18887 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.09■□□□□ 0.33
XRCC1P18887 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.09■□□□□ 0.33
XRCC1P18887 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
XRCC1P18887 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
XRCC1P18887 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
XRCC1P18887 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
XRCC1P18887 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
XRCC1P18887 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.09■□□□□ 0.33
XRCC1P18887 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
XRCC1P18887 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
XRCC1P18887 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
XRCC1P18887 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
XRCC1P18887 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.08■□□□□ 0.33
XRCC1P18887 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
XRCC1P18887 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
XRCC1P18887 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
XRCC1P18887 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
XRCC1P18887 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.33
XRCC1P18887 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
XRCC1P18887 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.08■□□□□ 0.33
XRCC1P18887 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
XRCC1P18887 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.08■□□□□ 0.33
XRCC1P18887 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
XRCC1P18887 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
XRCC1P18887 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
XRCC1P18887 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms