Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 METTL21AP1-201ENST00000438852 635 ntBASIC16.65■□□□□ 0.26
TNFP01375 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TNFP01375 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
TNFP01375 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.65■□□□□ 0.26
TNFP01375 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.65■□□□□ 0.26
TNFP01375 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.65■□□□□ 0.26
TNFP01375 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.65■□□□□ 0.26
TNFP01375 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TNFP01375 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
TNFP01375 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TNFP01375 AL353732.1-201ENST00000569618 1459 ntBASIC16.65■□□□□ 0.26
TNFP01375 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TNFP01375 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
TNFP01375 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
TNFP01375 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.65■□□□□ 0.26
TNFP01375 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.65■□□□□ 0.26
TNFP01375 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TNFP01375 AC012569.1-201ENST00000591191 1524 ntBASIC16.65■□□□□ 0.26
TNFP01375 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TNFP01375 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
TNFP01375 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
TNFP01375 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.26
TNFP01375 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.64■□□□□ 0.25
TNFP01375 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TNFP01375 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.64■□□□□ 0.25
TNFP01375 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.64■□□□□ 0.25
TNFP01375 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.64■□□□□ 0.25
TNFP01375 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.64■□□□□ 0.25
TNFP01375 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
TNFP01375 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.64■□□□□ 0.25
TNFP01375 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
TNFP01375 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TNFP01375 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.64■□□□□ 0.25
TNFP01375 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TNFP01375 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TNFP01375 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.63■□□□□ 0.25
TNFP01375 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TNFP01375 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
TNFP01375 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.63■□□□□ 0.25
TNFP01375 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.63■□□□□ 0.25
TNFP01375 AC116353.5-201ENST00000638148 1699 ntBASIC16.63■□□□□ 0.25
TNFP01375 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.63■□□□□ 0.25
TNFP01375 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.63■□□□□ 0.25
TNFP01375 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.63■□□□□ 0.25
TNFP01375 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.63■□□□□ 0.25
TNFP01375 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TNFP01375 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TNFP01375 AC004835.2-201ENST00000603762 682 ntBASIC16.63■□□□□ 0.25
TNFP01375 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.63■□□□□ 0.25
TNFP01375 AC105339.1-204ENST00000636249 355 ntBASIC16.63■□□□□ 0.25
TNFP01375 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TNFP01375 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TNFP01375 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TNFP01375 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TNFP01375 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TNFP01375 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TNFP01375 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TNFP01375 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.63■□□□□ 0.25
TNFP01375 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TNFP01375 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TNFP01375 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 NOC2LP2-201ENST00000407594 1944 ntBASIC16.62■□□□□ 0.25
TNFP01375 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.62■□□□□ 0.25
TNFP01375 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
TNFP01375 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 SLC25A1P3-201ENST00000395415 828 ntBASIC16.62■□□□□ 0.25
TNFP01375 HMGA1P7-201ENST00000406908 502 ntBASIC16.62■□□□□ 0.25
TNFP01375 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TNFP01375 AL671277.1-201ENST00000429656 993 ntBASIC16.62■□□□□ 0.25
TNFP01375 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.62■□□□□ 0.25
TNFP01375 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
TNFP01375 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TNFP01375 FAM86C2P-203ENST00000528684 1004 ntBASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms