Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AC099343.3-201ENST00000605834 2503 ntBASIC18.53■□□□□ 0.56
RNF40O75150 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF40O75150 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
RNF40O75150 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF40O75150 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.53■□□□□ 0.56
RNF40O75150 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF40O75150 MIR574-201ENST00000385209 96 ntBASIC18.53■□□□□ 0.56
RNF40O75150 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF40O75150 AF186996.4-201ENST00000467186 377 ntBASIC18.53■□□□□ 0.56
RNF40O75150 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.53■□□□□ 0.56
RNF40O75150 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.53■□□□□ 0.56
RNF40O75150 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF40O75150 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.53■□□□□ 0.56
RNF40O75150 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.53■□□□□ 0.56
RNF40O75150 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF40O75150 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
RNF40O75150 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF40O75150 AC008608.2-201ENST00000606089 416 ntBASIC18.53■□□□□ 0.56
RNF40O75150 AC148477.8-201ENST00000624298 468 ntBASIC18.53■□□□□ 0.56
RNF40O75150 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
RNF40O75150 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF40O75150 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF40O75150 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
RNF40O75150 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC18.53■□□□□ 0.56
RNF40O75150 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF40O75150 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RNF40O75150 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.53■□□□□ 0.56
RNF40O75150 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
RNF40O75150 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.52■□□□□ 0.56
RNF40O75150 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.52■□□□□ 0.56
RNF40O75150 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
RNF40O75150 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 AC132008.2-207ENST00000454517 770 ntBASIC18.52■□□□□ 0.56
RNF40O75150 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.52■□□□□ 0.56
RNF40O75150 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC18.52■□□□□ 0.56
RNF40O75150 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.52■□□□□ 0.56
RNF40O75150 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
RNF40O75150 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.55
RNF40O75150 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
RNF40O75150 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
RNF40O75150 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.51■□□□□ 0.55
RNF40O75150 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 MST1L-201ENST00000442552 2185 ntBASIC18.51■□□□□ 0.55
RNF40O75150 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
RNF40O75150 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.51■□□□□ 0.55
RNF40O75150 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.51■□□□□ 0.55
RNF40O75150 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 MIR149-201ENST00000384879 89 ntBASIC18.51■□□□□ 0.55
RNF40O75150 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
RNF40O75150 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.51■□□□□ 0.55
RNF40O75150 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.51■□□□□ 0.55
RNF40O75150 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.51■□□□□ 0.55
RNF40O75150 AL589935.2-201ENST00000616471 1231 ntBASIC18.51■□□□□ 0.55
RNF40O75150 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 AC117500.6-201ENST00000624871 588 ntBASIC18.51■□□□□ 0.55
RNF40O75150 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.51■□□□□ 0.55
RNF40O75150 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.51■□□□□ 0.55
RNF40O75150 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.51■□□□□ 0.55
RNF40O75150 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF40O75150 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.5■□□□□ 0.55
RNF40O75150 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF40O75150 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.5■□□□□ 0.55
RNF40O75150 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF40O75150 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RNF40O75150 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF40O75150 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF40O75150 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC18.5■□□□□ 0.55
RNF40O75150 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF40O75150 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF40O75150 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms