Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 POM121L3P-201ENST00000419331 1163 ntBASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 AC104819.1-201ENST00000504587 486 ntBASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 MIR5100-201ENST00000579544 119 ntBASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 AC099336.1-202ENST00000602961 463 ntBASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TCRBV7S3A2A0A539 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.39■□□□□ 0.38
TCRBV7S3A2A0A539 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
TCRBV7S3A2A0A539 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
TCRBV7S3A2A0A539 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 ABCD1P5-201ENST00000445663 754 ntBASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TCRBV7S3A2A0A539 SIGLEC16-201ENST00000599858 1437 ntBASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 LINC00982-205ENST00000420957 435 ntBASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 ALOX12P2-203ENST00000570921 1945 ntBASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TCRBV7S3A2A0A539 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TCRBV7S3A2A0A539 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TCRBV7S3A2A0A539 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.37■□□□□ 0.37
TCRBV7S3A2A0A539 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.37■□□□□ 0.37
TCRBV7S3A2A0A539 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms