Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 SPDYE21P-201ENST00000413323 827 ntBASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 POM121L3P-201ENST00000419331 1163 ntBASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 AC114341.1-201ENST00000618070 349 ntBASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 AL139384.1-201ENST00000612143 3047 ntBASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
PCDHA3Q9Y5H8 PKD1P1-201ENST00000458669 6805 ntBASIC17.89■□□□□ 0.46
PCDHA3Q9Y5H8 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.46
PCDHA3Q9Y5H8 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
PCDHA3Q9Y5H8 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
PCDHA3Q9Y5H8 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 HLA-A-202ENST00000376806 1854 ntBASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 LINC00265-3P-201ENST00000447588 903 ntBASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 AC004817.3-201ENST00000602957 2129 ntBASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 SIGLEC16-201ENST00000599858 1437 ntBASIC17.89■□□□□ 0.45
PCDHA3Q9Y5H8 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 MIR3180-1-201ENST00000580374 94 ntBASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 MIR3180-3-201ENST00000584616 94 ntBASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 IER3-202ENST00000376377 1350 ntBASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 AL391256.1-201ENST00000443260 1855 ntBASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.88■□□□□ 0.45
PCDHA3Q9Y5H8 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHA3Q9Y5H8 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHA3Q9Y5H8 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHA3Q9Y5H8 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHA3Q9Y5H8 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHA3Q9Y5H8 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHA3Q9Y5H8 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.87■□□□□ 0.45
PCDHA3Q9Y5H8 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHA3Q9Y5H8 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHA3Q9Y5H8 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
PCDHA3Q9Y5H8 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PCDHA3Q9Y5H8 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms