Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CISHQ9NSE2 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
CISHQ9NSE2 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.25■□□□□ 0.51
CISHQ9NSE2 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
CISHQ9NSE2 AC098831.1-202ENST00000438821 336 ntBASIC18.25■□□□□ 0.51
CISHQ9NSE2 DUX4L17-201ENST00000557360 1267 ntBASIC18.25■□□□□ 0.51
CISHQ9NSE2 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CISHQ9NSE2 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.25■□□□□ 0.51
CISHQ9NSE2 AF228730.7-201ENST00000641842 219 ntBASIC18.25■□□□□ 0.51
CISHQ9NSE2 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.25■□□□□ 0.51
CISHQ9NSE2 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CISHQ9NSE2 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
CISHQ9NSE2 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.25■□□□□ 0.51
CISHQ9NSE2 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CISHQ9NSE2 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CISHQ9NSE2 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CISHQ9NSE2 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CISHQ9NSE2 AC020916.1-201ENST00000587762 1774 ntBASIC18.25■□□□□ 0.51
CISHQ9NSE2 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 AC079776.4-201ENST00000511039 504 ntBASIC18.24■□□□□ 0.51
CISHQ9NSE2 IGHV3-65-201ENST00000523210 341 ntBASIC18.24■□□□□ 0.51
CISHQ9NSE2 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CISHQ9NSE2 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.24■□□□□ 0.51
CISHQ9NSE2 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CISHQ9NSE2 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.23■□□□□ 0.51
CISHQ9NSE2 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.23■□□□□ 0.51
CISHQ9NSE2 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CISHQ9NSE2 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.23■□□□□ 0.51
CISHQ9NSE2 AC087163.2-201ENST00000457299 853 ntBASIC18.23■□□□□ 0.51
CISHQ9NSE2 IGHV3-22-201ENST00000520721 359 ntBASIC18.23■□□□□ 0.51
CISHQ9NSE2 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.23■□□□□ 0.51
CISHQ9NSE2 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CISHQ9NSE2 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 AL121761.2-201ENST00000598007 1648 ntBASIC18.23■□□□□ 0.51
CISHQ9NSE2 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CISHQ9NSE2 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.23■□□□□ 0.51
CISHQ9NSE2 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
CISHQ9NSE2 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CISHQ9NSE2 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CISHQ9NSE2 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CISHQ9NSE2 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.22■□□□□ 0.51
CISHQ9NSE2 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CISHQ9NSE2 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CISHQ9NSE2 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CISHQ9NSE2 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CISHQ9NSE2 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
CISHQ9NSE2 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.22■□□□□ 0.51
CISHQ9NSE2 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.22■□□□□ 0.51
CISHQ9NSE2 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms