Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.43■□□□□ 0.22
PIF1Q9H611 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.43■□□□□ 0.22
PIF1Q9H611 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.43■□□□□ 0.22
PIF1Q9H611 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PIF1Q9H611 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.42■□□□□ 0.22
PIF1Q9H611 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.42■□□□□ 0.22
PIF1Q9H611 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 PCDHA1-201ENST00000378133 2726 ntBASIC16.42■□□□□ 0.22
PIF1Q9H611 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 AL162727.3-201ENST00000635661 2787 ntBASIC16.42■□□□□ 0.22
PIF1Q9H611 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.42■□□□□ 0.22
PIF1Q9H611 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.42■□□□□ 0.22
PIF1Q9H611 STARP1-201ENST00000397973 869 ntBASIC16.42■□□□□ 0.22
PIF1Q9H611 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.42■□□□□ 0.22
PIF1Q9H611 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 LINC01238-205ENST00000567549 1107 ntBASIC16.42■□□□□ 0.22
PIF1Q9H611 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.42■□□□□ 0.22
PIF1Q9H611 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
PIF1Q9H611 PKD1P5-201ENST00000532415 10291 ntBASIC16.42■□□□□ 0.22
PIF1Q9H611 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.42■□□□□ 0.22
PIF1Q9H611 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.42■□□□□ 0.22
PIF1Q9H611 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
PIF1Q9H611 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
PIF1Q9H611 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
PIF1Q9H611 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PIF1Q9H611 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
PIF1Q9H611 AC092364.2-201ENST00000596710 2692 ntBASIC16.42■□□□□ 0.22
PIF1Q9H611 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.42■□□□□ 0.22
PIF1Q9H611 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
PIF1Q9H611 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PIF1Q9H611 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.41■□□□□ 0.22
PIF1Q9H611 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.41■□□□□ 0.22
PIF1Q9H611 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
PIF1Q9H611 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.41■□□□□ 0.22
PIF1Q9H611 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
PIF1Q9H611 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
PIF1Q9H611 FAM8A6P-201ENST00000407496 1135 ntBASIC16.41■□□□□ 0.22
PIF1Q9H611 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.41■□□□□ 0.22
PIF1Q9H611 TSPY5P-201ENST00000426936 936 ntBASIC16.41■□□□□ 0.22
PIF1Q9H611 AC117947.1-201ENST00000427448 529 ntBASIC16.41■□□□□ 0.22
PIF1Q9H611 FAM210CP-201ENST00000445714 574 ntBASIC16.41■□□□□ 0.22
PIF1Q9H611 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PIF1Q9H611 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.41■□□□□ 0.22
PIF1Q9H611 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.41■□□□□ 0.22
PIF1Q9H611 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.41■□□□□ 0.22
PIF1Q9H611 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.41■□□□□ 0.22
PIF1Q9H611 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms