Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 AC026120.1-201ENST00000611536 926 ntBASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 LINC00896-202ENST00000609602 2128 ntBASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
PAAF1Q9BRP4 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 AL645939.2-201ENST00000427340 991 ntBASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 AC109322.1-201ENST00000524499 1264 ntBASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PAAF1Q9BRP4 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PAAF1Q9BRP4 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PAAF1Q9BRP4 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
PAAF1Q9BRP4 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.14■□□□□ 0.5
PAAF1Q9BRP4 AL353732.1-201ENST00000569618 1459 ntBASIC18.14■□□□□ 0.5
PAAF1Q9BRP4 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.14■□□□□ 0.5
PAAF1Q9BRP4 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PAAF1Q9BRP4 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 AC092053.1-201ENST00000605787 1936 ntBASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 AC243562.1-201ENST00000560672 389 ntBASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PAAF1Q9BRP4 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms