Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 ELK2AP-201ENST00000392510 1007 ntBASIC16.72■□□□□ 0.27
VPS13AQ96RL7 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 AC234783.1-201ENST00000441761 496 ntBASIC16.72■□□□□ 0.27
VPS13AQ96RL7 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 HLA-V-204ENST00000476601 1289 ntBASIC16.72■□□□□ 0.27
VPS13AQ96RL7 AC027307.2-201ENST00000591252 911 ntBASIC16.72■□□□□ 0.27
VPS13AQ96RL7 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 TUBB1P2-201ENST00000422712 1306 ntBASIC16.72■□□□□ 0.27
VPS13AQ96RL7 TUBB1P1-201ENST00000503144 1300 ntBASIC16.72■□□□□ 0.27
VPS13AQ96RL7 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS13AQ96RL7 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 MIR4515-201ENST00000584082 81 ntBASIC16.71■□□□□ 0.27
VPS13AQ96RL7 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 MIR1908-201ENST00000410394 80 ntBASIC16.71■□□□□ 0.27
VPS13AQ96RL7 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
VPS13AQ96RL7 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
VPS13AQ96RL7 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 AC046185.3-201ENST00000623228 1824 ntBASIC16.7■□□□□ 0.26
VPS13AQ96RL7 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS13AQ96RL7 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms