Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 AC026120.1-201ENST00000611536 926 ntBASIC16.63■□□□□ 0.25
LMX1AQ8TE12 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1AQ8TE12 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 AL355306.1-201ENST00000415580 579 ntBASIC16.62■□□□□ 0.25
LMX1AQ8TE12 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 SPDYE11-202ENST00000450699 704 ntBASIC16.62■□□□□ 0.25
LMX1AQ8TE12 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 AC023141.5-201ENST00000458585 616 ntBASIC16.62■□□□□ 0.25
LMX1AQ8TE12 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 FAM86C2P-203ENST00000528684 1004 ntBASIC16.62■□□□□ 0.25
LMX1AQ8TE12 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 SPDYE9P-201ENST00000570642 692 ntBASIC16.62■□□□□ 0.25
LMX1AQ8TE12 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 AC099522.2-201ENST00000607001 744 ntBASIC16.62■□□□□ 0.25
LMX1AQ8TE12 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 SPDYE10P-202ENST00000612005 668 ntBASIC16.62■□□□□ 0.25
LMX1AQ8TE12 SPDYE8P-202ENST00000612377 668 ntBASIC16.62■□□□□ 0.25
LMX1AQ8TE12 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.62■□□□□ 0.25
LMX1AQ8TE12 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 ADH5P3-201ENST00000433842 1137 ntBASIC16.61■□□□□ 0.25
LMX1AQ8TE12 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 AC005412.3-201ENST00000580309 715 ntBASIC16.61■□□□□ 0.25
LMX1AQ8TE12 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1AQ8TE12 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LMX1AQ8TE12 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms