Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CLHC1Q8NHS4 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 FER1L4-210ENST00000615531 5998 ntBASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 PCED1CP-201ENST00000419887 785 ntBASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 AP002383.4-201ENST00000442518 975 ntBASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 LINC00265-3P-201ENST00000447588 903 ntBASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 TPSP2-201ENST00000561760 610 ntBASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 AC116407.4-201ENST00000623319 1061 ntBASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 AC073592.5-201ENST00000624854 528 ntBASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CLHC1Q8NHS4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms