Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 GGCT-205ENST00000409436 954 ntTSL 3 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 HS6ST1P1-201ENST00000481504 1234 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 IGHV3OR16-6-201ENST00000568775 360 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AL596442.2-201ENST00000610240 980 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC107918.4-202ENST00000641623 219 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC079776.2-201ENST00000641154 1609 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 MIR3197-201ENST00000582241 73 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 CA12-203ENST00000422263 2556 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC006504.4-201ENST00000592118 1568 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 AC012317.2-201ENST00000623305 2251 ntBASIC5.32□□□□□ -1.56
SYNE1Q8NF91 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 RPS29-206ENST00000557111 488 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC5.32□□□□□ -1.56
SYNE1Q8NF91 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 SNHG9-202ENST00000564014 471 ntBASIC5.31□□□□□ -1.56
SYNE1Q8NF91 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SYNE1Q8NF91 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms