Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 AC025678.2-201ENST00000562061 970 ntBASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 AC093512.1-201ENST00000617969 520 ntBASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HDDC3Q8N4P3 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 AC068137.2-201ENST00000605408 478 ntBASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 AC091812.2-201ENST00000619081 385 ntBASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 NOC2LP1-202ENST00000452600 2235 ntBASIC17.15■□□□□ 0.34
HDDC3Q8N4P3 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.14■□□□□ 0.34
HDDC3Q8N4P3 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
HDDC3Q8N4P3 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
HDDC3Q8N4P3 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms