Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 AL136038.4-201ENST00000603606 1261 ntBASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
DEPDC4Q8N2C3 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 KRT8P47-201ENST00000604727 1398 ntBASIC16■□□□□ 0.15
DEPDC4Q8N2C3 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 AC092597.1-201ENST00000487352 616 ntBASIC16■□□□□ 0.15
DEPDC4Q8N2C3 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
DEPDC4Q8N2C3 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 AC046185.3-201ENST00000623228 1824 ntBASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 FXN-203ENST00000396366 922 ntTSL 2 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 BX276092.5-203ENST00000456199 560 ntBASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 METTL23-204ENST00000586752 904 ntTSL 2 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms